Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01817 ATGTTGCAGCTTCCAATGGCTGCCACTAAGTTCAACAAGAAGAAGGGTGTGAAACGGGACGACGCTCCATCGAAAAGAAAGAAGAAGGAAGAGCTCTTCACACCTAAACGTTCTAAGGAGGAAGATGATGATTCTGACCTTTCTGAAGCTCTGGATGAGGAAGAAGTAAATAATGGACTGATTGATGGTGACGAAGAAGGATCTGAGTCTGGTTCTGAAGATTCTTCTGATGGTGATGACCCTTTGGCTCATGATTTCCTCCAAGGAAGTGACGAAGAGAATGATTCGGGCTCGGTTTCAAGTTCTGATTCCGATGAAACTGACATCGAAGACAAGTCGAGAATCATCGATGAAAAAAGGGCGAGGGAAGAGAAAGATGCAGCGGATGAAATGCAGCTCAATATTAAAGAAGAATCCGATGAGTTCAGATTACCAACCAAGGAGGCTTTGAGGCAAGAGGGAGCAACCCGTAAAGATTATGTCGAACAACTTAAGAAGGATATTGGTTCATATTATGGGTATAATGAGTTTCTTATTGGGGTGCTGGTTGAGATGTTTCCAGTAGTTGAGCTAATGGAACTTGTTGAAGCTTTTGAAAAGCCTAGACCGATATGTTTGCGGACTAACACCTTAAAGACAAGAAGGCGGGATCTGGCAGATGTTCTGATTAACAGAGGTGTAAACCTAGATCCTTTAAGCAAGTGGTCAAAGGTTGGACTTGTTGTGTATGATTCCCAAGTGCCAATTGGAGCAACTCCTGAATATATGGCTGGTTTTTACATGCTACAAGGTGCAAGCTCCTTTCTGCCTGTGATGGCTCTTGCTCCTCAGGAAAAAGAACGAATCGTTGACATGGCGGCGGCACCTGGTGGTAAAACTACTTACATAGCAGCTCTGATGAAAAATAGTGGGATAATATTTGCAAATGAGATTAAAGCACCAAGATTGAAGTCCCTTACCGCGAATTTACATCGGATGGGAGTAACAAATACTGTTGTCTGCAACTATGATGGGAAGGAGCTCCCGAAAGTATTGGGCAAGAATACAGCTGATAGAGTTCTATTAGATGCCCCTTGCAGTGGATCTGGAGTTGTATCTAAGGATGAATCTGTTAAAACCTCAAAAAGCTTAGAGGAAATCCAGAAATGTGCCGAGTTGCAGAAGCAACTTATACTCGCTGCAATTGACATGGTTGATTCAAATTCAAAATCTGGGGGATATGTTGTTTACTCCACATGCTCCATAATGGTTGATGAGAATGAAGCAATTGTTGACTATGCACTTAAAAAGAGGGATGTGAAACTTGTGCCATGTGGCCTTGATTTTGGACGTCCCGGGTTTATCCGATTCAGGGAAAGACGTTTTCACCCATCTTTAGAGAAGACAAGGCGTTTCTACCCCCATGTCCACAACATGGATGGCTTTTTTGTTGCAAAGTTGAAGAAAATGAGCAACAAGATTCCAACTGCACAATCTTCAGAATCATTGAATGAGGCTGTGGAAGAAGATGATGATGCAGAGAAGAGCGGAAATGAGAAGAACGATGGCGAATGTCTTCACCCTCAATTAAATGACGGTAAAAAGAGGAAGAAGGTTTCACAAAATCACGACGACAAAAATGGCAAAGAATCCAAGCCCACTGTGGAAAAGAGGAAGAAGAGAAAATTTCCTTCAAGAGAGGAAATTTCAAAAGCAAGATTTTTACGGTTCATTTCGAACTCTCTGCAGAGAGGAAAAACGACAAGCTTTGAGGGAAAAGAAAGATGGGAGCAAGAAAGGGCTGAAACCCATTTCCCCTTTCTTGTTTTCTTCCCCTCAAATCCTTCCAAAATCATGTCTAGCAACAGAGAAAGAGACGACCCTCTTTCCTTCATCCCCACTAACCTATCTTCCTCTTCTTCCCCTGTCTCCGTTTCTGATCCTCGTGATAGTTTTCTCTCTGACCCAACTACCCACATCGGAAGTGCCTCCGGCAGCTTCCAGAATGAGGGTCTTCTCTCTGATTTCAGTGCCAACATCAGCGATGCCGAGTTTGGATTCTCTCGCGCTGAGTTTCGCCAGACCCCACTTTTTGGGACTGTCGATTTCTATGAACGCCATGTGTTTCTTTGTTACAAGAATCCCCAGGTTTGGCCTCCTAGGATTGAGGCTGCTGAGTTCGATCGCCTCCCTAGGCTGCTTTCTGCGGCTGTAATGTCGAGGAAGGGCGATATGAAGAAAGAAGTAGAAGTGCTTGTGAAGAACGGCGAGTGGCAGCCTGGATCTCCTGAAGCACTGAAGGGTTCATATGTTTTCGTATGTTGTCATGGGTCCCGAGATCGTCGATGTGGCGTTTGTGGTCCTACCTTGGTCAGTCGGTTCCGAGATGAGATAAAATTTCTTGGTCTTCAAAATGAAGTATCTGTTAGCCCATGCTCGCATATTGGGGGCCACAAGTATGGCTATGTTGCCCCTGAAGATGTATTTTTATTGCTTCAGCATCATATTGTGAAAGGGAAGATTGTAGACGAACTTTGGAGGGGCCAGATGGGTTTATCCGAGGAAGAACAGAAGCTGACCCTTGAAAGGAGACTTAGAGTTAGTGCAATCAGTGGGACTAATGGCCATAAAAGCAAGGAAGAGCTGGCACAAATCGAGACTAGTGATCCGAACTCCGATCATTATAGATCTCGTGTTGATGTTACAGCCTGCTGTCAGGGAGACGGAGATGGAGATGGTTATTCCTCTTGCTGTCAGAATCCCAGACTATCAGGAACAGTAAACGATTCAGATGCAGACAACATTCCTCCAAATGGTGTTACTGCAAACAGCAACAGAAAACTAACTTCACGAAGCAATAGCAGCAAATCATCCTCCCGTAAGGTTTGTGCAATGCCAACATGGCTCGAGAGCTGGGAGCGCGAAGATACGTACGCCGTTGCTGCTGTTATCTGTGCTGCTGTGTCGGTTGCCTTTGCTTATCGCTGCTACAAGCAGCTAAGAAAGCAAAAAGAGATGAAAAACGGGCATGGAGAAACGACGTCGTCTCCGTTGTTCGAAATCAGAGATGACCGATACAGAGGAGCTTACAGAGCTTTTGCGGCGACGGTCATGGCTGGAATTTCTCTGATTTGGGTTTACAGAGCCGCCGTTATGCCAGCCGCCGGCCAACCTGGGCGGTGGCCTTGGATCGGATTGTTTATCTCTGAGGTCAGTTTGAACAGGTACAACGACGACCAATTACCAAATGTCGACATTTTCATTTGCACAGCCGACCCCATTCTCGAACCGCCGGTCTTGGTCATCAACACCGTCTTATCCGCCATGGCCTTCGATTACCCAACTGAGAAATTGGTCATTTATCTCTCCGACGATGGCTGTTCTGACTTCACATTCTACGCTCTCTTTGAAGCTTCGAATTTCGCCAAGCATTGGCTACCTTTTTGTAGAAAGTTCATGGTCGAGCCTAGGTCTCCAGAGGCCTACTTTTCTCTCCATTCTGCCCTGCATCATCGTTCTCAAGAGTATATCGACACGAAGTGGGTTGCACAGAAACTGTTTGATGAAATGAAGGAGAGAATTAGCTCGGTGGTTGAGATTGGGAGGGTTCCTAAGGAGATACGGGATCAAAATAAAGGTTTCTCTGAGTGGGATAATGGTGTAACAAAGCAAAATCATCAGTCCATTGTGAAGATAATAGTTGATGGAAAGAATCATGATGATGTGGATATTGATGGATGTGTACTTCCAAAATTGGTGTACATGGCACGTGAAAAGAGACCCCAGCATCCCCACCATTTTAAAGCTGGAGCTATGAATGCACTGATAAGAGTATCCTCAGAGATAAGCAATGCTCCATTCATCCTCAACTTAGACTGTGATATGTATTCAAATAATCCAGACACTATAAAGGAGTTACTATGTTTTTTCCTGGATGGGAAAAGAGGCCATGACATTGCATTTGTGCAATTCCCACAAGACTTCGATAACATTACAAAAAATATGATATATGGCATTCCAGATCGAGTTGTTAATGAGATTGAACTAGCTGGCATCTCTGGCTATGGCACTGCCTTGTATTGTGGCACTGGATGTTTCCATCGCAGAGAAGCTCTCAGCGGGAAGAAATACGTCGAAGATCTTAATGGATCAGTACATTTGGACGTACAAACTGAAAAGAAAGTTCCAAAACCTGTTAATGAATTGGAAGAAGCATGTAAGCTTCTCGTTGACTGCAACTTTGAAAGTGGCTCTCAATGGGGAAAGGAGTTGGGATTAATATACGGGTGCCCGGTTGAAGATATTGTTACTGGGTTAACTGTACAGTGCAGAGGTTGGAGATCAGTTTACTATAATCCAAAGAAAAGAGCTTTTTTGGGTGTTGCTCCGATTAGCTTGGATGTAGCTCTAGTTCAATATATGAGGTGGTCTGAAGGCTTGTTTCAAATATTTTTGTCCAAGTATTGCCCCTTCATATATGGACATGGGAAGATCAAATTTGGAGCTCAAATGGGATATTGTGTATATCTTTTATGGGCTCCACTTTCGATACCAATGCTGTATTATGCCACCGTTCCTGCACTTTGTCTGCTTCAAGGCATGCCCCTATTCCCAGAGGTTACAAGCTTATGGGCCATACCTTTTGCCTATGTCTTTGTAACCAATAACTGTTGGAGCATAGTTGAGGCCATAACTTGTGGCTGTACACTCAAAGCTTGGTGGAACTTGCAAAGAATGTTACTTTTCAGAAGGACCACTGCATTCTTTTTTGCCTTCATTGACACAATCATCAAGCAGCTTGGGCTTTCTCAAACTAAATTTGCTGTGACTGCTAAAGTTGCAGCTGAGGATGTGTCGAAGCGATACGAACAAGAGATCCTAGAGTTTGGGAGCTCAGATATAATGTGTACTATAATAGCAACAGTTGCAATGCTCAACCTTTTTGGTTTATTGCTGGGAATTAAGAATGTTGCTGCTGTGAATTTGGAGTTGTTTTACAAAGGTTTGAACAAATTCATTCTGCAAACTGTTCTTTGTGGGCTAATTGTTTCGATCAACTTTCCCACATATGAAGCCCTCTTCATTCGCAGGGACAAGGGGCGTTTGCCATCCTCTGTTTTGTTCAAGTCTGTTACTTTGGCTTTATTGCTTTGTATATTTTTCTTTCAAAAACTTTGA 5157 43.73 MLQLPMAATKFNKKKGVKRDDAPSKRKKKEELFTPKRSKEEDDDSDLSEALDEEEVNNGLIDGDEEGSESGSEDSSDGDDPLAHDFLQGSDEENDSGSVSSSDSDETDIEDKSRIIDEKRAREEKDAADEMQLNIKEESDEFRLPTKEALRQEGATRKDYVEQLKKDIGSYYGYNEFLIGVLVEMFPVVELMELVEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIFANEIKAPRLKSLTANLHRMGVTNTVVCNYDGKELPKVLGKNTADRVLLDAPCSGSGVVSKDESVKTSKSLEEIQKCAELQKQLILAAIDMVDSNSKSGGYVVYSTCSIMVDENEAIVDYALKKRDVKLVPCGLDFGRPGFIRFRERRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNKIPTAQSSESLNEAVEEDDDAEKSGNEKNDGECLHPQLNDGKKRKKVSQNHDDKNGKESKPTVEKRKKRKFPSREEISKARFLRFISNSLQRGKTTSFEGKERWEQERAETHFPFLVFFPSNPSKIMSSNRERDDPLSFIPTNLSSSSSPVSVSDPRDSFLSDPTTHIGSASGSFQNEGLLSDFSANISDAEFGFSRAEFRQTPLFGTVDFYERHVFLCYKNPQVWPPRIEAAEFDRLPRLLSAAVMSRKGDMKKEVEVLVKNGEWQPGSPEALKGSYVFVCCHGSRDRRCGVCGPTLVSRFRDEIKFLGLQNEVSVSPCSHIGGHKYGYVAPEDVFLLLQHHIVKGKIVDELWRGQMGLSEEEQKLTLERRLRVSAISGTNGHKSKEELAQIETSDPNSDHYRSRVDVTACCQGDGDGDGYSSCCQNPRLSGTVNDSDADNIPPNGVTANSNRKLTSRSNSSKSSSRKVCAMPTWLESWEREDTYAVAAVICAAVSVAFAYRCYKQLRKQKEMKNGHGETTSSPLFEIRDDRYRGAYRAFAATVMAGISLIWVYRAAVMPAAGQPGRWPWIGLFISEVSLNRYNDDQLPNVDIFICTADPILEPPVLVINTVLSAMAFDYPTEKLVIYLSDDGCSDFTFYALFEASNFAKHWLPFCRKFMVEPRSPEAYFSLHSALHHRSQEYIDTKWVAQKLFDEMKERISSVVEIGRVPKEIRDQNKGFSEWDNGVTKQNHQSIVKIIVDGKNHDDVDIDGCVLPKLVYMAREKRPQHPHHFKAGAMNALIRVSSEISNAPFILNLDCDMYSNNPDTIKELLCFFLDGKRGHDIAFVQFPQDFDNITKNMIYGIPDRVVNEIELAGISGYGTALYCGTGCFHRREALSGKKYVEDLNGSVHLDVQTEKKVPKPVNELEEACKLLVDCNFESGSQWGKELGLIYGCPVEDIVTGLTVQCRGWRSVYYNPKKRAFLGVAPISLDVALVQYMRWSEGLFQIFLSKYCPFIYGHGKIKFGAQMGYCVYLLWAPLSIPMLYYATVPALCLLQGMPLFPEVTSLWAIPFAYVFVTNNCWSIVEAITCGCTLKAWWNLQRMLLFRRTTAFFFAFIDTIIKQLGLSQTKFAVTAKVAAEDVSKRYEQEILEFGSSDIMCTIIATVAMLNLFGLLLGIKNVAAVNLELFYKGLNKFILQTVLCGLIVSINFPTYEALFIRRDKGRLPSSVLFKSVTLALLLCIFFFQKL 1718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23954349 23996774 + Lsi02G018170.1 Lsi02g01817 656559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01817 1718 Gene3D Glutaredoxin 761 842 - -
Lsi02g01817 1718 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 194 483 IPR001678 GO:0008168
Lsi02g01817 1718 MobiDBLite consensus disorder prediction 872 888 - -
Lsi02g01817 1718 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 168 482 IPR029063 -
Lsi02g01817 1718 MobiDBLite consensus disorder prediction 77 91 - -
Lsi02g01817 1718 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1091 1481 IPR029044 -
Lsi02g01817 1718 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 190 267 IPR031341 -
Lsi02g01817 1718 CDD TRX_Fd_Sucrase 761 843 IPR009737 -
Lsi02g01817 1718 MobiDBLite consensus disorder prediction 918 951 - -
Lsi02g01817 1718 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 157 177 IPR023273 GO:0008168
Lsi02g01817 1718 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 213 226 IPR023273 GO:0008168
Lsi02g01817 1718 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 190 202 IPR023273 GO:0008168
Lsi02g01817 1718 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 206 482 IPR011023 GO:0003723|GO:0006396|GO:0008757
Lsi02g01817 1718 Coils Coil 121 141 - -
Lsi02g01817 1718 Pfam Sucrase/ferredoxin-like 755 813 IPR009737 -
Lsi02g01817 1718 Gene3D Vaccinia Virus protein VP39 270 597 IPR029063 -
Lsi02g01817 1718 MobiDBLite consensus disorder prediction 869 888 - -
Lsi02g01817 1718 Pfam 16S rRNA methyltransferase RsmB/F 271 481 IPR001678 GO:0008168
Lsi02g01817 1718 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1005 1713 - -
Lsi02g01817 1718 MobiDBLite consensus disorder prediction 506 547 - -
Lsi02g01817 1718 PRINTS RNA (C5-cytosine) methyltransferase signature 405 421 IPR023267 GO:0001510
Lsi02g01817 1718 PRINTS RNA (C5-cytosine) methyltransferase signature 465 482 IPR023267 GO:0001510
Lsi02g01817 1718 PRINTS RNA (C5-cytosine) methyltransferase signature 283 293 IPR023267 GO:0001510
Lsi02g01817 1718 PRINTS RNA (C5-cytosine) methyltransferase signature 351 363 IPR023267 GO:0001510
Lsi02g01817 1718 PRINTS RNA (C5-cytosine) methyltransferase signature 254 268 IPR023267 GO:0001510
Lsi02g01817 1718 SUPERFAMILY Thioredoxin-like 763 845 IPR036249 -
Lsi02g01817 1718 MobiDBLite consensus disorder prediction 105 128 - -
Lsi02g01817 1718 Gene3D Sun protein; domain 3 160 267 - -
Lsi02g01817 1718 MobiDBLite consensus disorder prediction 1 128 - -
Lsi02g01817 1718 MobiDBLite consensus disorder prediction 13 44 - -
Lsi02g01817 1718 MobiDBLite consensus disorder prediction 45 76 - -
Lsi02g01817 1718 Pfam Cellulose synthase 1077 1368 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lsi02g01817 1718 Pfam Cellulose synthase 1383 1714 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lsi02g01817 1718 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1067 1170 IPR029044 -
Lsi02g01817 1718 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1211 1384 IPR029044 -
Lsi02g01817 1718 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN CSLE 1005 1713 - -
Lsi02g01817 1718 MobiDBLite consensus disorder prediction 488 559 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01817 - - - csv:101211777 1244.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00789 Lsi-Chr1:6153724 Lsi02g01817 Lsi-Chr2:23954349 4.84E-08 dispersed
Lsi02g01594 Lsi-Chr2:21836872 Lsi02g01817 Lsi-Chr2:23954349 5.17E-60 dispersed
Lsi02g01817 Lsi-Chr2:23954349 Lsi07g00743 Lsi-Chr7:8124700 5.30E-137 dispersed
Lsi03g01349 Lsi-Chr3:24372666 Lsi02g01817 Lsi-Chr2:23954349 3.20E-47 dispersed
Lsi04g01887 Lsi-Chr4:25995521 Lsi02g01817 Lsi-Chr2:23954349 5.75E-08 dispersed
Lsi02g01817 Lsi-Chr2:23954349 Lsi02g01818 Lsi-Chr2:24001811 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g697 . . . . . . . . . . Cma01g01067 Cma09g01020 Car01g00941 Car09g00924 . Cpe06g00828 Cpe02g00831 . . . . . . . . . . . . . . . . . . Lsi02g01817 . . . . . . . . . . Bma14g00675 . Cmo01g01109 Cmo09g01023 . . . . . . . . . . . . . . . . . . . . . . . Cme01g00884
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000615 3 9 2 4 3 1 3 2 2 3 1 2 3 4 3 3 2 4 3 2 3 1 2 3 4 2 2 8 4 2 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g01817 Lsi_Chr02 FPKM 3.192864 3.630793 4.648554 4.663506 16.586571 14.351366 19.204964 6.287997 5.484992 7.138593