Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01820 ATGAATGCATGGAGAGAGACGCCAGTCAGACGGTTTCACCCTGTGGCTCCACTCACTGCCGCTGCAATGGCCGCTTCAAAGGCGGCTTCGGTGCTCGAAGTTGCAGTCTTTATCGATACTGATTTCGGCACCCGCCTGGCGGTTGGCGTTCCGCCGGACATCGCCGCCGGAGCTTTAAAGAGGGAAGTTGAGAGAGTACATTTTAACTGTTTCCCAAGTATAGGAGAGATCAAGGTGGATGGATTCATGATTGTTTTTGTTTGTTCTCATGGTCAACATCAGATTGAAGGCCATTCTTCTAATTTGTGCCATTTCTATGTGAAGCAAAACTCAAACTTCTACCATTTGCCTGACACGTTGCTCACAAAACTCACTTCCCGACTGGATATAATGCAGTTTCTTCATGTCCAAGCACGGCCTTTGAATGAGTTTATTGAGCCTCGTTTACCTGAAAATGCTGATTGTTTCCCCAACCTAAACTATGTCACTTACCCTACGGAAAGTCGAGGCTACTTGGGAACTGCCTGCAAGAGTAAAATCAGAATCAATGGCAAGAAACATACAAGAAAAAGGTTCAGAAGGAAGAATTGCTTATCAAGACTAGTTGGCCGAGGCATCTTAGCCTGGAATACTAGGAGAAAGAGGAAAATAACTAACAAAAAACAGCTTTTAGAGCAAATGGAAAAGAATTCTGATATGGAGGATCCAGTAAAAGATGCAGAAAATCCCGATGGCTCGATTGATACATCGTCGTACCATTGTGTGCCAAATGATGAAGTGAGGATCACAAAACAAAAGTTGGCAAGCTCCTCATTGTTAGAGGCAGACACAACCAGTGAGTTATCATCTGAAGTCATGTCTGTTTCAAGTATCATAAAAAGATATTTTCTGAGCAATGACGAAGTGAGCAGCATTTCAAACCATTCGAGCTACGGCATTACTCAAAGTCAGCCAGAAGAGTATTTGAAGATGAAGAAGAATATGGCAAGAGACCCAAGCTCGTTACCTTTGAAAATGCCATTTAAAGCATGTTCTCAAAAGCCTGAGAGATCTAAGCTTGGGAAAAGTTTGGTGATGGCTTCATATAATCTTGGGATTTCTCCCAACAGGGGAAGACCAGAAATTTCACTGTGCAATGCTAAAGGTAAAAAGTTTCAAGAACTGATGACTTTAGCTAAAAGTTCTTGTTTTGAGATAAGTGACAGTGAAGATTGA 1215 42.39 MNAWRETPVRRFHPVAPLTAAAMAASKAASVLEVAVFIDTDFGTRLAVGVPPDIAAGALKREVERVHFNCFPSIGEIKVDGFMIVFVCSHGQHQIEGHSSNLCHFYVKQNSNFYHLPDTLLTKLTSRLDIMQFLHVQARPLNEFIEPRLPENADCFPNLNYVTYPTESRGYLGTACKSKIRINGKKHTRKRFRRKNCLSRLVGRGILAWNTRRKRKITNKKQLLEQMEKNSDMEDPVKDAENPDGSIDTSSYHCVPNDEVRITKQKLASSSLLEADTTSELSSEVMSVSSIIKRYFLSNDEVSSISNHSSYGITQSQPEEYLKMKKNMARDPSSLPLKMPFKACSQKPERSKLGKSLVMASYNLGISPNRGRPEISLCNAKGKKFQELMTLAKSSCFEISDSED 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24011061 24014152 - Lsi02G018200.1 Lsi02g01820 656562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01820 404 MobiDBLite consensus disorder prediction 225 252 - -
Lsi02g01820 404 Coils Coil 210 230 - -
Lsi02g01820 404 MobiDBLite consensus disorder prediction 225 242 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01820 - - - csv:101220553 547.354
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g679 . . Bda07g00414 . . . . . . . Cma01g01071 . Car01g00947 . . . Cpe02g00827 Bhi09g01781 . . . . . . . . . . . . . Cone6ag0006 . . . Lsi02g01820 . . . . . . . Bpe11g00591 . . Bma14g00678 . Cmo01g01114 . . . . . . . . . . . . . . Cla09g02083 Cam09g2171 Cec09g2236 . . . . . . Chy01g01138 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012285 1 2 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g01820 Lsi_Chr02 FPKM 22.476685 25.24324 24.585657 27.191399 22.775015 21.533043 20.875179 42.586224 41.30048 42.005314