Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01822 ATGGCGGCGATGGAGAAGCTATTCGTGCAGATCTTCGAGAGGAAGAAGTGGATCATTGACCAGGCGAAGCAGCAGACCAATCTCTTCGACCAGCACCTCGCTTCCAAGCTCATTATCGATGGAATCGTTCCTCCTCCTTGGCTCCACTCGTCTTTTCTTCATTCCCACATTTCTCATTTCGAAGAAGTGAACAAAAGTTTTATTTCTGGAGTTGAGTTCCCACGTTCGCCGCTTGACACCCATCGTTCTAGTTTGAATGAGGCATTTGTTGCAGACAGTGGGGAGGAGTTGCAATACAGGTCGAATGAAGAAGCTGGTTCTTTAAACGATGATTTTGATGCAGGAAATAGGCCAGCAGTTTCACCCCAGTGTGACATAAGTGACGATAGTGTCTTAAATTGCGCGCCTCGTATTGACATGAGTCCTGTTTCTCCTCAAGGTGGAGGAGGCATAGTTTCAGAAAATTACCGAGATCCTACTCTGTCATTGGCACGGTTACACAGATCTAAATCTAGGCAAAAGGCTTTAGAGTTGCGTAATAGTGTGAAATCTACAAGGTGTCAATCTCGGTGTGAGAACAAGAGTGATTCTATTGCTGGTGGGATTGTGGGATCTGCTATTGGTTTGCTGCAAGCTGATCACGAAGATGAATCAGGGTTGGCAAAGCCTTCCAGTAGCTGTAAGGGAATTGGTTCTGTAGAAGAAGAAACTAATGTTGGTTGCGAGCAGAAGGATATCTCTATTTGCTTGGATAAAGTTACAATAGTTGGAAGCCCTGAGTTGCAAAGTAGCTCTATTGATGTGGGCAATCCTTTAAACATTTCCTCTAGAAATGAAGAGTTATATGTAGCTGGAGGTTCAACGCATAATTCTTATCAAGTAAATGAGCAATTTGACTCACCTAGACCTTCTTCTGGAAAGACTGAATACTGTAAAGAAGGGTCGGCAAATTGCAGGAGCCAGGAGCATAATTTAGATAACGCTGAACAGTCTAGGTTGCACTGTAGCTCTTTTGATGTGAATAAATCTTCCTGCATTTCCCCTGAAGATGGAAGAGTATGTCCTATAGGAGGCTCAAAATTGCATTCTGATCAAGTGCAGGAGCAATTGGACTTGCCTAAACCTTCTTCTGACAACGTTGAGTGTCGGGAAGAGGTGGCGTTTGGACATTGCAGGAGCCATGACTATGATCTTGATAATGCTCTACAGTCTGGGTCACAACGAAGTTCCCTGGATGTGGACGATTCATCATGCATTGACACCAGTGATGGAAAATTGTTGGACTTGTCTAACCCTTCTTCTGGGGAAGTTGAATGCTGTGAAGAAAATATTTTAGGACATTGCAGGAGCCAGGAATGTAATTTTGATAATGCCCATCAGTCTGGGTCGCAATACAGCTCCCACGATGTGGATAATTCTTCATATGTTGACTCTGAGGAGGGAGGATCATGTCCCATTGGAAGTTCAAAAGTGCATCCTGATGAAGTGACAGAGCTATTGGACTTGTCTAAATCTTCTTCCGACAATATGAAGTGCTGTGAAGAAAAAATATTAGGAGATTTCAGTAGTCAGGAGTATAAACTTAATAGTGCTCAAAAGTCTGGTATGCAACATAGCTCCCTGGATGTGGACAATTCATCCTGCTTTTCTTCTGTAAATGAAACTCTATGTCCTGTTGGAAGTTTGAAGCGATATTCTGATCAAGTGACTGAGCCATTGGAGTTGTTTAGACCTTCTTCTGTCAATATTGAATGCCATGAAGAAGAGCTAGAAGACTGTAAGACCCAGGACGGCAATTTTGATAACAATGCGGAACAGTCTGGTCTAGACAAAATTTTCAGTTCACCAATAACGGAAGTAAGGGAGAAAACATCAGATAAGAAGCCCTCCAGTTTTCTGGATGACAAGAGGGATGTTAATGAAAAAGAAAAATGCAATTCACCCCTTCACATACCTTTGCCACAGATTCAGGTAGACTCAGTGAAGGAAAACGGATCTGATGAAGGTGTATCTAAATCTCACAGTGAGAGGAGATATGAAGACACAGGAGATTTTAACGGATATACTTTCTCATCTGCCAACAAGTCACTGCAAGGTTATGAAGAAGTAACTACTTGTCCTTCGCAGCAAAGTGATGAACCTGCTGAACAAAATATTTCTTTGAAAGATGGAGTACCAAATTTGCAGTATTCCCATGAAAATGTAGTTGAAATTTCACCAGTGGATGCGGACAATGCATCAATTCTGATAAGAGATGCAGAAACATTTAGAGATCACATGGTCATGGTTCCTTGCGTTCCTTCCGCTGGTGAAAGGGATAGTAATTTGGAGCAGCAACTGAAAAGTTCAGGCATATCTCAGTGTGAAGATTCAGATTCCTTTAAGGGTTGCACTGATGACTTTAATGGTAACCATCATTGCATATCAACAGAGTGCCAGACTGCAGAAACATCAATAGAGTTAAAAACTTTCAGCTCAGTTTTGAAGTCATCTAGTTCTCATGATGATGTGAGAAAGGTTGAGCTGCAATTGGAGAATGGTATTCCTGAATCTTTAGGCTCGAGGAAAAATTACCAATTATCAAGTGTGAGCATCGTCCCTATTGAAATGTTGCTTTTGGAAAAGGAAGCTCACTTAATGCAGGTGTCTGATTCTTCACCCACGCTTCCAGTTGAAAAGGATCTCTCTAGGTCCAGAAGTAATAACAGAGGCACACCGTTGCAAAATGTCATGTTAGAGAGCCAAAGTTTGGATCCCAGAGAAAATCTTCAGTTTGGAGATAATGAACTTCCTGTTGATACTGGGAAAACTGAAGGAGAGGAGGAAAAGGGGAAACTTACTTCTTGCTCGCTTCTTACTCCCCTTATCCAAACTTCTCATTATCTTGGTGCAGATAAGGATATGCCTGCATTAGAGGGGTTCCTAATGCAGTCTGATGATGAACAGCCATGCATTTCTGTTAGTGGAATCAACTTTGACAAATTAGAACTTTCAAAGTGTATGATAGAACGTGCTACCATCTTGGAGAAAATTTGTAAATCTGCTTGTATAAACAGTCCATTATCCTCATCTTCAGAAAGTTTTCAGTTGAACAAGGTGACAGATTTGTACCATTCTCTTCCTAATGGTCTACTTGAGAACATGGACTTGAAGAGTAACCTTCTGATGAATGATCAAAATAAGCTACTGAAGAATGGCAGTAACTTCTTGAATGGAGAAATCGACTGCTCTCCTCATGGGTCTTTTTTTGATTGCCTTCAAAGCATTAGCAGTCATTCAGCTAGCGATGTCCGGAAGCCTGTTGCATCTCCATTTGGTAAGTTGTTGGATAGAAATTCATTAAATTCCTCAAGTTCGGGAAAACGAAGCAGCCAGAACATAGAGCTTCCTTGCATTAATGAAGAAGCTGAGAGTACAGATGAGATTGATAACGAGTTTTCAAAGGATATGAGATCGAACAAGCGAGTACCACTTGTTGACATTACAGAAAATGCAAATGTTCAGTTAACAGTTTCTGAAGCTGCAACGTTTGCTGATAGATTGAGTTTAGAATCTTTAAACACGGAACTCAGCAACACAGGGACTCATAATAGAACCAAGGAGAACCTGGGAAACCAGAAAAACAGTAAAAGGAAATATGTGAATGAGGCTGTAGATCTTGGTATCTTGCCAGGAGCAAACGGAGCTAAGAGAGTCACTAGATCATCTTATAATGGATTTAGCAGGTCAGATTTATCCTGTAAAGAAAATTTCAGAAAAGAAGGCCCTCGATTCTCTGGGAAGGAATCCAAGCATAAAAATATTGTGTCCAATATTACTTCTTTTATTCCTCTTGTCCAACAAAGAGAAGCTGCAACTATTTTGAAAGGGAAGAGAGATGTTAAGGTGAAGGCCATTGAGGCTGCTGAGGCTGCAAAACGCCTTGCAGAAAAGAAAGAAAATGAACGTCAAATGAAGAAAGAAGCCCTGAAACTTGAAAGAGCAAGAATGGAACAAGAGAATTTGAGGCAGATTGAACTTGAGAAAAAGAAGAAAGAAGAAGATCGAAAAAAGAAAGAGGAAGAAAGGAAGAAAAAGGAGGCTGATATGGCAGCAAAGAAAAGACAGAGGGAAGAAGAAGAGAGGAAGGAGAAAGAAAGAAAAAGAATGCGTGTTGAAGAAGTTAGGAGACGATTACGAGAGCATGGTGGGAAGTTACGATCTGATAAAGAGAATAAGGAACCGAAACCCCAGGCCAATGAACAAAAACCACGTGACAGAAAGGCATGTAAGGATGCGACTGACAAACTGGACAAGGAAAGTGGACATGACAAATTTGACAAACTCTCAGGTACTGAGTCCAAGACTACTTCTACAAGCGATGCTGGGAGTGGAAACTTTGTTATGGAGGACTCACAACCAATGAGTGTAGATTTTCTAGAGGCAGAGGCACTTGAAAATGGGATGGAAAATAGAATCTCCGAAACAAGTGAAGAACAATCATATCAGATTTCTCCTTACAAAGCTTCTGATGATGAAGATGAAGAGGATGACGATGATGGCATACAAAATAATAAATTTGTTCCTTCGTGGGCCAGTAAGGATCGCTTGGCTGCGCTTTTTGCTTCCCAGCAAAAATTGAATCCAGAAATTATCTTTCCACCGAAAAGCTTTTGTGATATAGCCGAAGTTCTCTTGCCTCGACAGCATCAGTTTAAATAG 4701 41.14 MAAMEKLFVQIFERKKWIIDQAKQQTNLFDQHLASKLIIDGIVPPPWLHSSFLHSHISHFEEVNKSFISGVEFPRSPLDTHRSSLNEAFVADSGEELQYRSNEEAGSLNDDFDAGNRPAVSPQCDISDDSVLNCAPRIDMSPVSPQGGGGIVSENYRDPTLSLARLHRSKSRQKALELRNSVKSTRCQSRCENKSDSIAGGIVGSAIGLLQADHEDESGLAKPSSSCKGIGSVEEETNVGCEQKDISICLDKVTIVGSPELQSSSIDVGNPLNISSRNEELYVAGGSTHNSYQVNEQFDSPRPSSGKTEYCKEGSANCRSQEHNLDNAEQSRLHCSSFDVNKSSCISPEDGRVCPIGGSKLHSDQVQEQLDLPKPSSDNVECREEVAFGHCRSHDYDLDNALQSGSQRSSLDVDDSSCIDTSDGKLLDLSNPSSGEVECCEENILGHCRSQECNFDNAHQSGSQYSSHDVDNSSYVDSEEGGSCPIGSSKVHPDEVTELLDLSKSSSDNMKCCEEKILGDFSSQEYKLNSAQKSGMQHSSLDVDNSSCFSSVNETLCPVGSLKRYSDQVTEPLELFRPSSVNIECHEEELEDCKTQDGNFDNNAEQSGLDKIFSSPITEVREKTSDKKPSSFLDDKRDVNEKEKCNSPLHIPLPQIQVDSVKENGSDEGVSKSHSERRYEDTGDFNGYTFSSANKSLQGYEEVTTCPSQQSDEPAEQNISLKDGVPNLQYSHENVVEISPVDADNASILIRDAETFRDHMVMVPCVPSAGERDSNLEQQLKSSGISQCEDSDSFKGCTDDFNGNHHCISTECQTAETSIELKTFSSVLKSSSSHDDVRKVELQLENGIPESLGSRKNYQLSSVSIVPIEMLLLEKEAHLMQVSDSSPTLPVEKDLSRSRSNNRGTPLQNVMLESQSLDPRENLQFGDNELPVDTGKTEGEEEKGKLTSCSLLTPLIQTSHYLGADKDMPALEGFLMQSDDEQPCISVSGINFDKLELSKCMIERATILEKICKSACINSPLSSSSESFQLNKVTDLYHSLPNGLLENMDLKSNLLMNDQNKLLKNGSNFLNGEIDCSPHGSFFDCLQSISSHSASDVRKPVASPFGKLLDRNSLNSSSSGKRSSQNIELPCINEEAESTDEIDNEFSKDMRSNKRVPLVDITENANVQLTVSEAATFADRLSLESLNTELSNTGTHNRTKENLGNQKNSKRKYVNEAVDLGILPGANGAKRVTRSSYNGFSRSDLSCKENFRKEGPRFSGKESKHKNIVSNITSFIPLVQQREAATILKGKRDVKVKAIEAAEAAKRLAEKKENERQMKKEALKLERARMEQENLRQIELEKKKKEEDRKKKEEERKKKEADMAAKKRQREEEERKEKERKRMRVEEVRRRLREHGGKLRSDKENKEPKPQANEQKPRDRKACKDATDKLDKESGHDKFDKLSGTESKTTSTSDAGSGNFVMEDSQPMSVDFLEAEALENGMENRISETSEEQSYQISPYKASDDEDEEDDDDGIQNNKFVPSWASKDRLAALFASQQKLNPEIIFPPKSFCDIAEVLLPRQHQFK 1566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24027496 24036891 - Lsi02G018220.1 Lsi02g01822 656564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01822 1566 MobiDBLite consensus disorder prediction 1109 1132 - -
Lsi02g01822 1566 MobiDBLite consensus disorder prediction 616 645 - -
Lsi02g01822 1566 MobiDBLite consensus disorder prediction 1325 1463 - -
Lsi02g01822 1566 MobiDBLite consensus disorder prediction 1108 1140 - -
Lsi02g01822 1566 MobiDBLite consensus disorder prediction 595 685 - -
Lsi02g01822 1566 PANTHER TROPONIN I 162 1508 - -
Lsi02g01822 1566 PANTHER TROPONIN I 162 1508 - -
Lsi02g01822 1566 MobiDBLite consensus disorder prediction 921 944 - -
Lsi02g01822 1566 MobiDBLite consensus disorder prediction 460 490 - -
Lsi02g01822 1566 Coils Coil 1295 1395 - -
Lsi02g01822 1566 Pfam Inner centromere protein, ARK binding region 1503 1557 IPR005635 -
Lsi02g01822 1566 MobiDBLite consensus disorder prediction 882 908 - -
Lsi02g01822 1566 MobiDBLite consensus disorder prediction 460 479 - -
Lsi02g01822 1566 MobiDBLite consensus disorder prediction 1325 1444 - -
Lsi02g01822 1566 MobiDBLite consensus disorder prediction 665 683 - -
Lsi02g01822 1566 MobiDBLite consensus disorder prediction 1477 1520 - -
Lsi02g01822 1566 MobiDBLite consensus disorder prediction 1483 1500 - -
Lsi02g01822 1566 MobiDBLite consensus disorder prediction 1445 1463 - -
Lsi02g01822 1566 MobiDBLite consensus disorder prediction 599 613 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01822 - - - cmo:103501253 2320.04
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g675 . . . . . . . Bma13g01118 . . Cma01g01073 Cma09g01015 Car01g00949 . Sed07g2762 Cpe06g00823 Cpe02g00825 Bhi09g01779 Tan01g3197 Cmetu01g1493 . . Mch11g1282 . . . . . . . . . . Cone14ag1224 Cone15ag1245 Lsi02g01822 . . . . Blo10g00866 . Bda12g00967 . . . . . Cmo01g01117 Cmo09g01018 . . . . . . . . . . . . . Cla09g02082 Cam09g2170 Cec09g2235 . . . . . . Chy01g01141 Cme01g00895
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006069 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 39