Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01825 ATGCTGCAGCAGCTCTGCCGCGGCGCCGCCGCCGGGACTTTGGTCCTTGCCGTGCTATTCCTCGTGATCTCCGACGTTAGGGCTCACAACATCACGCATCTTCTAGAGAAGCACCCGGAGTTCTCCACTTTCAACCACTACTTGACCGCCACTCACCTTGCGCCGGAGATTAACCGGAGAACCACCATTACTGTCTGCGTCGTCGACAACTCCGCCATGTCTGATCTCTTGGCCAAACATCTCTCCATTTACTCCGTCAAGAACACTCTCTCGCTCCATGTACTCCTCGACTACTTCGGAGCCAAGAAGCTTCATCAGATCACTAATGGAACTGCTCTCGCCGCGACTATGTTTCAAGCTACTGGCTCTGCTCCTGGTTCTTCCGGTTTCGTTAATATTACTGACCTCAAGGGCGGGAAGGTAGGGTTTGGCCTTCAGGATAGCGACGAGATTAATGCGTTGTTTGTGAAATCTGTGGAGGAGGTTCCGTATAATATCTCTGTGATTCAGATCAGTAAGATCTTGCCGTCGCAAGTGGCGGAAGCTCCAACTCCGTCTCCTAGTGAGATGAATTTGACCGGTATAATGTCTGCTCACGGTTGTAAGGTCTTTGCCGAAACTCTTCAGGCCTCTGACGCTGTGCAGACGTTTCAGGAAAATGCAGTCGGTGGATTGACGGTTTTCTGTCCTCTAGACGACGTTTTCAAGGCGTTTTTGCCGAAGTACAAGAACTTGACGGCCGCTGGAAAGATCTCCTTGCTCGAATACCACGGTTTGCCTGTGTATAATTCTATGTCCATGCTTAAGTCCAACAATGGCGTCACGAACACCTTGGCCACCGACGGTGCCAACAAGTTCGATTTCGTCGTGCAAAACGACGGCGAAGTGGTCACTCTCCAGACGAAAGTCGTAACCGCTAAGGTCACCGGCACGCTTCTCGACGAGCAACCAGTGGCGATCTACACAATCGACAAAGTTCTGAAGCCAAGAGAGCTCTTCAAGAAGGAGGCTGCGACTCCTACTCCGGCCCCGGCTCCAGCGCCAGAGACCGAGAAACCTGCCGACGCTCCAAAGGCTCATTCTCGTCGGCACAAGGGCGCCGCGACTCCTGCAGCAGACTCACCGGCAGATTCGCCGTCCGACGAAGATGCAGCAGATCAGACTGCGGACGGAAATGGCGCGGTGAGGCTCAACGGATGGAGATTTGTTTTGGCCGGAATTTCAGGATTGACAGCACTTCTTCTACTGTAA 1251 53.08 MLQQLCRGAAAGTLVLAVLFLVISDVRAHNITHLLEKHPEFSTFNHYLTATHLAPEINRRTTITVCVVDNSAMSDLLAKHLSIYSVKNTLSLHVLLDYFGAKKLHQITNGTALAATMFQATGSAPGSSGFVNITDLKGGKVGFGLQDSDEINALFVKSVEEVPYNISVIQISKILPSQVAEAPTPSPSEMNLTGIMSAHGCKVFAETLQASDAVQTFQENAVGGLTVFCPLDDVFKAFLPKYKNLTAAGKISLLEYHGLPVYNSMSMLKSNNGVTNTLATDGANKFDFVVQNDGEVVTLQTKVVTAKVTGTLLDEQPVAIYTIDKVLKPRELFKKEAATPTPAPAPAPETEKPADAPKAHSRRHKGAATPAADSPADSPSDEDAADQTADGNGAVRLNGWRFVLAGISGLTALLLL 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24079021 24080271 - Lsi02G018250.1 Lsi02g01825 656567

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01825 416 Pfam Fasciclin domain 39 109 IPR000782 -
Lsi02g01825 416 Pfam Fasciclin domain 200 329 IPR000782 -
Lsi02g01825 416 ProSiteProfiles FAS1/BIgH3 domain profile. 28 175 IPR000782 -
Lsi02g01825 416 SUPERFAMILY FAS1 domain 185 330 IPR036378 -
Lsi02g01825 416 MobiDBLite consensus disorder prediction 336 392 - -
Lsi02g01825 416 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 13 403 - -
Lsi02g01825 416 Gene3D FAS1 domain 27 176 IPR036378 -
Lsi02g01825 416 Gene3D FAS1 domain 192 330 IPR036378 -
Lsi02g01825 416 SUPERFAMILY FAS1 domain 35 175 IPR036378 -
Lsi02g01825 416 ProSiteProfiles FAS1/BIgH3 domain profile. 188 327 IPR000782 -
Lsi02g01825 416 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 403 IPR033254 -
Lsi02g01825 416 SMART fasc_3 64 178 IPR000782 -
Lsi02g01825 416 SMART fasc_3 226 330 IPR000782 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01825 - - - csv:101212499 719.539
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g01825 Lsi05g00498 CCT
Lsi02g01825 Lsi05g00498 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01825 Lsi-Chr2:24079021 Lsi11g01342 Lsi-Chr11:22046506 1.66E-153 dispersed
Lsi02g01825 Lsi-Chr2:24079021 Lsi02g01362 Lsi-Chr2:18295775 1.03E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g668 . Blo03g01484 Bda07g00412 Bda09g00439 Bpe09g00126 Bpe08g01090 . Bma13g01116 . Cmo06g00685 Cma01g01075 Cma09g01013 Car01g00951 . Sed07g2749 Cpe06g00821 Cpe02g00823 Bhi09g01777 Tan01g3193 Cmetu01g1443 . . Mch11g1277 . Cla10g00408 Cam10g0405 Cec10g0427 Cco10g0417 Clacu10g0412 Cmu10g1244 Cre10g0661 Cone6ag0009 . Cone14ag1220 Cone15ag1241 Lsi02g01825 . . Cme06g02759 . . . Bda12g00965 Bpe11g00589 . Bma07g01245 Bma14g00680 . Cmo01g01120 Cmo09g01015 . . . . . . . . . . . . . Cla09g02079 Cam09g2166 Cec09g2231 . . . . Lsi05g00498 . Chy01g01144 Cme01g00903
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004217 4 1 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 43