Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01840 ATGGGTAGCCAAGAAGCTAGACAGCCACTGTTACCAACATCGTCTAATACTTCTGGAAAAAGGTTAATAGATATTCCTAGAAGGAAAAGACGATTGAGGCGCACTAAGAGTGCTCCTCATGCAGTTTCTCCTCACACAGAGATCACCTGCACCAGCAACGTTCCAGCCACTGGTCCAGTTCCACGTTCAGGATTAATTTTTGGAAATCTACACCCAAGTTTCAGAAGAGTAGCCTTAGTTTTAATAATATACCTGGGTATTGGAACTTTATGTTTTTACCTTGTCAGGTACCAAATCAAAGGGGAAAAAACAAATGGAATAGTCGATGCCATTTATTTCACTATTGTGACAATGACAACTGTTGGATATGGAGATCTTGTCCCAAACAGTCCTTCCGCAAAACTACTAGCTTGTGCTTTCGTTTTCACAGGAATGGCCCTAATTGGCCTAATACTGAGCAATGCAGCCGATTATTTGGTGGAGAAGCAGGAAATCTTGCTATTTAAAGCCTTCCATATGCACCAAAATGGCCATTGTGACATTACAAAAGAAATTGATACCAATAAAGCTAGAAACAAGTGTATTGTGGTGTTTCTCATTCTTCTTTTGTTCATCATTTCTGGGACTGTCTTTCTAGTTACCCTTGAGAAGTTAGATTTTATTGATGCCTTTTATTGTGTATGTTCAACCATCACAACGCTAGGCTATGGAGATAAAAGCTTCTCGACCAGGTGGGGGCGTCTGTTCGCCATTTTCTGGATCTTGATAAGTACCATCACTCTAGCTCAGTTTTTCCTTTACATTGCTGAGCTAAACACTGAGAGAAGGCAAAAGTCTCTGGTAAAGTGGGTTCTATGTAAAAAGGTGACAGACTTAGACCTCGAGGTTGCAGATCTCGATGATGATGGGGTCGTCGGGGCTGCAGAATTTGTCATATACAAGCTCAAGGAGATGGGGAAGATTACTGAAGATGACATTTCACCTGTGTTGAAGGAATTTGAGAATCTTGATGTTGATCAATCAGGAACTCTGTCTATATCTGATATAACACTTGCTCAACTATCTTAA 1068 40.64 MGSQEARQPLLPTSSNTSGKRLIDIPRRKRRLRRTKSAPHAVSPHTEITCTSNVPATGPVPRSGLIFGNLHPSFRRVALVLIIYLGIGTLCFYLVRYQIKGEKTNGIVDAIYFTIVTMTTVGYGDLVPNSPSAKLLACAFVFTGMALIGLILSNAADYLVEKQEILLFKAFHMHQNGHCDITKEIDTNKARNKCIVVFLILLLFIISGTVFLVTLEKLDFIDAFYCVCSTITTLGYGDKSFSTRWGRLFAIFWILISTITLAQFFLYIAELNTERRQKSLVKWVLCKKVTDLDLEVADLDDDGVVGAAEFVIYKLKEMGKITEDDISPVLKEFENLDVDQSGTLSISDITLAQLS 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24163922 24167473 - Lsi02G018400.1 Lsi02g01840 656582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01840 355 Pfam Ion channel 200 271 IPR013099 -
Lsi02g01840 355 Pfam Ion channel 80 160 IPR013099 -
Lsi02g01840 355 SUPERFAMILY Voltage-gated potassium channels 71 174 - -
Lsi02g01840 355 Gene3D - 71 165 - -
Lsi02g01840 355 PRINTS Two pore domain K+ channel signature 116 144 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lsi02g01840 355 PRINTS Two pore domain K+ channel signature 232 241 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lsi02g01840 355 PANTHER TWO PORE POTASSIUM CHANNEL A 20 349 - -
Lsi02g01840 355 MobiDBLite consensus disorder prediction 24 38 - -
Lsi02g01840 355 SUPERFAMILY EF-hand 293 350 IPR011992 -
Lsi02g01840 355 Gene3D - 177 283 - -
Lsi02g01840 355 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 20 349 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lsi02g01840 355 SUPERFAMILY Voltage-gated potassium channels 187 293 - -
Lsi02g01840 355 ProSitePatterns EF-hand calcium-binding domain. 298 310 IPR018247 -
Lsi02g01840 355 MobiDBLite consensus disorder prediction 1 21 - -
Lsi02g01840 355 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00177 Lsi-Chr1:1719206 Lsi02g01840 Lsi-Chr2:24163922 3.08E-51 dispersed
Lsi02g01157 Lsi-Chr2:13941721 Lsi02g01840 Lsi-Chr2:24163922 6.34E-128 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01840 K05389 - csv:101216032 603.979