Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01842 ATGCAGCCAAACAGCAGTTTCCAGACCCTCTACCCGAACCAAAAAATTGATCTAAACCCTAATCTTCCGAAAATGTCCCCTCTGATTTTCCGATCCCGATTCATTTCCCTGCTGAAGAATCGCCATGGCCGTCTTATGAGCTCCGACCTCGCTTCTACTCCTTCCAAAGATGCCATCAATGCGTCTCAGAAGCTCGTCTCCGATCAGATTCCACCTGATGCTCAATCCACTACTACTACTTCTTCTTCTTCCACTAGTAAGCCTTTGAATTTCCTCAAGTATAGTTTGATTGGTGCTCTCACAGGTGCAACTGCGGTTGCTGGTTACGCCAGCTATGCTTATAGTTATGATGAAATTGAGGAGAAGGCAAAAGCTCTCCGTCGTTCTGCTAGTCATACTGCCACGGACGATGTCTCTGGTGTTGATAAAGTTCAGGGCATGCTCTACTCCACGATAATGTCAGTTCCTGCAAAACTTGTTGATGTTTACCTGGATTTGAGGAAGACAATTGAAGAACAAGTTAAAGGTTATACTGAACCCAATGCGGAAATGCTTCTTCCAGAGTTGCATCCCCTGGAACGGCACGTGTTTACGCTTGTTCTAGATCTAAATGAGACACTAGTGTACTCTGATTGGACGCGAGAAAGAGGCTGGCAGACATTTAAAAGACCTGGAGTTGATTCTTTCTTGGAACATCTTGCCCAATTTTATGAAATTGTTATATACTCTGATCAATCAAATATGTATGTTGATCCTGTCATTGATAGGTTGGATCCCAAGCATTGCATACGATATAGGTTGTCAAGAGCAGCTACGAAGTATGAGAATGGAAAACATTATAGAGACTTGTCAAAGCTTAACAGGGATCCCAGGAAGATTATTTATTTGAGTGGCCATGCATTTGATAGTAGTCTACAACCAGAAAACTCTGTTCCAATAAAGCCATGGAAGTGTGAGACAGATGATACAGCTCTTCTTGATTTTATACCATTTCTTGAATTTGTTGCACGAAATAGTCCAGCTGACATCAGACAAGTACTAGAATCATACAAAGGATGTGATATTCCAACAGAATTTATAAGACGTTCTAAAGAGCATCAAAGGCGGATTCAAGAACAGAAGCAGCAGGGGCGAATATGGAAACGTTGA 1149 42.12 MQPNSSFQTLYPNQKIDLNPNLPKMSPLIFRSRFISLLKNRHGRLMSSDLASTPSKDAINASQKLVSDQIPPDAQSTTTTSSSSTSKPLNFLKYSLIGALTGATAVAGYASYAYSYDEIEEKAKALRRSASHTATDDVSGVDKVQGMLYSTIMSVPAKLVDVYLDLRKTIEEQVKGYTEPNAEMLLPELHPLERHVFTLVLDLNETLVYSDWTRERGWQTFKRPGVDSFLEHLAQFYEIVIYSDQSNMYVDPVIDRLDPKHCIRYRLSRAATKYENGKHYRDLSKLNRDPRKIIYLSGHAFDSSLQPENSVPIKPWKCETDDTALLDFIPFLEFVARNSPADIRQVLESYKGCDIPTEFIRRSKEHQRRIQEQKQQGRIWKR 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24192984 24200569 + Lsi02G018420.1 Lsi02g01842 656584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01842 382 Pfam NLI interacting factor-like phosphatase 198 344 IPR004274 -
Lsi02g01842 382 CDD HAD_FCP1-like 197 313 - -
Lsi02g01842 382 ProSiteProfiles FCP1 homology domain profile. 192 335 IPR004274 -
Lsi02g01842 382 SUPERFAMILY HAD-like 184 347 IPR036412 -
Lsi02g01842 382 MobiDBLite consensus disorder prediction 65 86 - -
Lsi02g01842 382 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 29 337 - -
Lsi02g01842 382 SMART forpap2 195 323 IPR004274 -
Lsi02g01842 382 Gene3D - 182 365 IPR023214 -
Lsi02g01842 382 PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM50-LIKE 29 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01842 K17496 TIM50; mitochondrial import inner membrane translocase subunit TIM50 - csv:101207617 673.315
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01842 Lsi-Chr2:24192984 Lsi04g00980 Lsi-Chr4:10470212 2.86E-16 dispersed
Lsi02g01842 Lsi-Chr2:24192984 Lsi01g00219 Lsi-Chr1:1989718 2.14E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g648 . . . . . . . . . . Cma01g01081 Cma09g01002 Car01g00956 Car09g00913 Sed07g2743 Cpe06g00810 Cpe02g00817 Bhi09g01749 Tan01g3181 Cmetu01g1982 . . Mch11g1259 . . . . . . . . . . Cone14ag1212 Cone15ag1233 Lsi02g01842 Csa07g00939 . . . . . . Bpe11g00582 . . Bma14g00172 . Cmo01g01127 Cmo09g01002 . . . . . . . . . . . . . Cla09g02063 Cam09g2152 Cec09g2217 . . . . . . Chy01g01165 Cme01g00930
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005181 0 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 2 1 1 1 1 1 1 4 2 2 41