Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01845 ATGCTACATGAGCTTTGCCACAATCTCCATGGTCCTCACAATGCCAATTTCTACAAGCTTTGGGATGAGCTTAGAAAGGAATGTGAGGAATTGATGGCTAAGGGAATTAGTGGTACAGCACAGGGATTTGATCTCCCGGGGAGGCGCTTGGGTGGTAATGTGCGCCAACCCCCTCTTTCTTCCCTCCGCAAATCTTCCCTAGCTGCTGAAGAAGGAAGAAGGCGTTTGGGATCTCTACTTCCATCTGGACCTAATCGGCTTGGTGGTGATAGCAACATCATGGTCGCACTAAGTCCTGTACAAGCAGCTGCAATGGCTGCAGAAAGGAGGCTTCAGGATGATATTTGGTGTGCTTCATCTCTAGAAATGCCTGTGGATGAGGATTGTTGCCCTGATTTTCCATCAGAAGCAGCGCATTCCTCCCAAGCAGGTAAATCAGGGTCCTTTAGCAATTTAAGTAAGGGTGTGGATGCATTACACCAGAAAAGAAGTCGCGAGTCAGAAAGGAGTTCTAACAAGTCTTCCAATGATCATCTGAAACCTGATTTTGTTGATTTATCCAAAGATGCTGCAATCCCTGGTTCCTCTACTGACTATGGTGCTGACTCAAATAAGCGTTATAAAATGCCAGATAGAGTTCCATTTCCTCAATCTTCTGCAGAAACTATCTCAATAGATTTGTCCTGTTCATCCTCTAATTTGATGCCAAGTCATGATGGAACTATTCATCCTCAAGAACTTTCCATGTGGGAATGTGGAAATTGCACCTTACTGAATCCACCACTCGCTCCAATGTGTGAGCTCTGTTTCTCGCAGAAGCCAAAAGATGCTGATACCAGATACAAATTCTGGTCATGTAAATTCTGCACCTTAGAAAACAGTGTGAAATTAGAGAAATGCTCAGCATGTGGTCAATGGAGATATTCTCATGGCCAGCCAGTGTCGACTCGAGGACCAAATCTCGGCACTTGA 972 44.96 MLHELCHNLHGPHNANFYKLWDELRKECEELMAKGISGTAQGFDLPGRRLGGNVRQPPLSSLRKSSLAAEEGRRRLGSLLPSGPNRLGGDSNIMVALSPVQAAAMAAERRLQDDIWCASSLEMPVDEDCCPDFPSEAAHSSQAGKSGSFSNLSKGVDALHQKRSRESERSSNKSSNDHLKPDFVDLSKDAAIPGSSTDYGADSNKRYKMPDRVPFPQSSAETISIDLSCSSSNLMPSHDGTIHPQELSMWECGNCTLLNPPLAPMCELCFSQKPKDADTRYKFWSCKFCTLENSVKLEKCSACGQWRYSHGQPVSTRGPNLGT 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24220380 24223139 + Lsi02G018450.1 Lsi02g01845 656587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01845 323 ProSiteProfiles Zinc finger RanBP2 type profile. 246 275 IPR001876 -
Lsi02g01845 323 SMART zf_4 248 272 IPR001876 -
Lsi02g01845 323 SMART zf_4 282 306 IPR001876 -
Lsi02g01845 323 MobiDBLite consensus disorder prediction 158 185 - -
Lsi02g01845 323 Gene3D - 244 283 - -
Lsi02g01845 323 Pfam WLM domain 1 112 IPR013536 -
Lsi02g01845 323 CDD M48_yhfN_like 1 27 - -
Lsi02g01845 323 MobiDBLite consensus disorder prediction 139 157 - -
Lsi02g01845 323 ProSitePatterns Zinc finger RanBP2-type signature. 284 303 IPR001876 -
Lsi02g01845 323 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 1 323 - -
Lsi02g01845 323 ProSitePatterns Zinc finger RanBP2-type signature. 250 269 IPR001876 -
Lsi02g01845 323 MobiDBLite consensus disorder prediction 132 208 - -
Lsi02g01845 323 PANTHER ZINC ION BINDING PROTEIN 1 323 - -
Lsi02g01845 323 ProSiteProfiles WLM domain profile. 1 112 IPR013536 -
Lsi02g01845 323 MobiDBLite consensus disorder prediction 44 66 - -
Lsi02g01845 323 SUPERFAMILY Ran binding protein zinc finger-like 247 273 IPR036443 -
Lsi02g01845 323 ProSiteProfiles Zinc finger RanBP2 type profile. 280 309 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01845 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-] - csv:101209563 594.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01924 Lsi-Chr1:23930535 Lsi02g01845 Lsi-Chr2:24220380 1.98E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g639 . . Bda07g00400 . . . . . . . Cma01g01083 Cma09g00998 Car01g00959 Car09g00910 . Cpe06g00807 Cpe02g00815 Bhi09g01746 . . . . Mch11g1254 . . . . . . . . Cone6ag0016 Cone9ag0015 . . Lsi02g01845 Csa07g00943 . . . . . . Bpe11g00580 . . Bma14g00174 . Cmo01g01129 Cmo09g00999 . . . . . . . . . . . . . Cla09g02060 Cam09g2149 Cec09g2214 . . . . . . Chy01g01168 Cme01g00936
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006397 1 2 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 38