Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01846 ATGGAGAGCTCCGGCGGCGGCGCTGGTGGTGGTGGTGGTGCAGGAGCAGAGGAATCATATGGTATGATCAGTTGGGATGATTTGCGTGTGGATGATTGGCGGCGGCAGGGGATCAGCTCCGGCGAGGGGTTGGAGAATGGGACTAGAATAATTGTGGTGGATAAGAACTGCTCCGGCGACTCCACGACGGTGCAAGGGGCGGTGGATATGGTTCCTCATAATAACAAACAGAGAGTTAAGATTTATATTCTTCCTGGCATTTACAGAGAGAAGGTATACATACCCATCACGAAACCATATATTTCCTTAATCGGAAACAAGAAACGAGTTACAGATACTGTTATTACATGGAACGACAAAGCATCCGACAAAGATATCAACGGAGTCGAGCTCGGGACATATAAAACAGCGACGGTTGCGATCGATTCCGACTACTTTTGTGCAACAGGAATCACATTTGAGAATACAATTGTTGCAATGCCTGGAGATAAGGGAAGACAAGCTGTAGCTTTAAGAATTACAGGAGATAAAGCAATGTTTTATAGAGTAAAATTCTTAGGAGGACAAGATACACTTTTGGATGACATGGGCACACATTATTTCTATCAATGTCACATTCAAGGAAGTCAATGTGTGATAACTTCCACAGCAGAGAGCTATGGTGCAATAGCAGCGCATCACCGGTCCTCGCCAGACGATGACACCGGGTTCTCTTTTGTGCGCTGTGTAATTAATGGAAGGGGCAAAGTACTCCTGGGAAGAGCATGGGGGAACTATTCAAGAACAATATATTCTTATTGTTACATTGAAGATGTAATAACTCCATTAGGTTGGGGTGACTGGAACGACCCATCAAGACAAAGGACAGTAGTTTTTGGGCAATATAATTGCAGGGGCAGTGGAGCTAACACAGAAAGTTGGGTGCCATGGGCAAAGACTTTCAGCTACGAGGAAGTGAGACCTTTTGTAGATAGGAAATATATCAAAGGAGAACAATGGCTTAACTTATGA 1011 44.51 MESSGGGAGGGGGAGAEESYGMISWDDLRVDDWRRQGISSGEGLENGTRIIVVDKNCSGDSTTVQGAVDMVPHNNKQRVKIYILPGIYREKVYIPITKPYISLIGNKKRVTDTVITWNDKASDKDINGVELGTYKTATVAIDSDYFCATGITFENTIVAMPGDKGRQAVALRITGDKAMFYRVKFLGGQDTLLDDMGTHYFYQCHIQGSQCVITSTAESYGAIAAHHRSSPDDDTGFSFVRCVINGRGKVLLGRAWGNYSRTIYSYCYIEDVITPLGWGDWNDPSRQRTVVFGQYNCRGSGANTESWVPWAKTFSYEEVRPFVDRKYIKGEQWLNL 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24224202 24228436 - Lsi02G018460.1 Lsi02g01846 656588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01846 336 SUPERFAMILY Pectin lyase-like 49 335 IPR011050 -
Lsi02g01846 336 Gene3D - 46 336 IPR012334 -
Lsi02g01846 336 PANTHER PECTINESTERASE QRT1 20 336 - -
Lsi02g01846 336 Pfam Pectinesterase 51 330 IPR000070 GO:0030599|GO:0042545
Lsi02g01846 336 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 20 336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01846 Lsi-Chr2:24224202 Lsi09g00424 Lsi-Chr9:4495920 3.06E-77 dispersed
Lsi02g01846 Lsi-Chr2:24224202 Lsi03g01970 Lsi-Chr3:31110745 1.57E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01846 K01051 - csv:101209316 605.134