Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01854 ATGGGTTCCTTTGATTACTCTATGCAAAATTTAACTAACTTGTTTTTTCATGACCCTTTTTTCCCTGTGAACTCTGCTGTTCACTTTCTCCTTGAACCCATTTTAGCTCACAGCCTGTCTGGTTTGGCTCACTTGGTTTTGTTGCTTGTTCTTTGCTTCTCATGGGTGTGCTTAAAGTTGAAGGCAGGATGTGGGGAACGTCAAAGCAAGACGAGGCGTTTGAACTATAACGGAACGTTCATGTGCTGCCTCGTTATTTCTGTTTTCAATCTTGTTTTCTTTTCTCTTGACTACTTTTACTGGTATAGAAATGGGTGGTCTGAGGAATATCTGGTGCCCCTTTTGGATTTCGGGTTGAAAGCATTAGCATGGGGCAATGTTTCTCAAGTTTCCAAAACTGGAAAATCAAAGTTTGCAATTCATTTGAGAGTTTGGTGGGTTTCTTACTTTGCTCTTTCTTGTTACGGTCTTGCTGTGGACTCAGTTCACTATAGACAAATCCATTCCTTGCCCATTAGATACTTGGTTTCGGATGTCATGTCGGTCGTCTCTGGTTTGTTGATCATATATGTTGGGTTCTTTGGGATGAGTGTGATTGAACAAGACCCTCTTGAAGAACACCTTTTAAATGGTGAAACAAGGTATACTAATCTCGGTAATGGCAGCATCGAGCCGAAGAACTGTAAAGGAGATGAAACTGTGACCCCATATGAGACTGCTGGAATTTTCAGTATCCTTTCATTCTCTTGGATTGGTCCTCTGATTGCAATGGGAAATAAAAAGGCATTAGATCTTGAGGATATTCCTCAACTTGCAAGTTGTGATGCTGTTTCTGAAACCTTTCGGATTCTCAGAAACACGCTCGAGTCTGAGTGTGGAACAATCAACCAAGTCACGACTCTTTCTCTAGTAAAGGGTTTATTCTACTCGGCTTGGAAAGAGATAATTTTAACTGCTGCTTTTGCAATCATTAGCACATTGGCTACTTATGTTGGACCCTATCTTATTGACACTTTTGTTCGATATCTCAATGGTCACCAAGATTTCGAATATGAGGGCTACATTCTGGTTTGTGTATTTTTCCTGGCAAAACTCGTGGAGTGTCTAGCGATAAGGCATTGGTTCTTTAGGGTACAACAAGTCGGAATGAAGGTTCGAGCAGCACTGGTTGCAATGATCTACAACAAGAGTCTGACTCTTTCTTGCCAGTCAAGGAAACAGCACACAAGTGGGGAGATCATCAACTTCATTGCTGTAGATGCTGAGAGGGTTTGTGATTTCAGTTGGTATATGCATGATGTTTGGCTGGTGGTTTTTGAAGTTGGATTCGCCCTGTTGGTTTTGTATAAAAGTCTTGGTCTTGCTTCAATTGCAGCCTTTGTTGCAACTATATCTATTATGTTGATAAATATTCCATTGGGAAAGTTGCAGGAAAAATTTCAGGACAAGATAATGGAGTCAAAAGACATAAGGATGAAGGCCACATCTGAAATCTTGAGAAATATGAGGATTCTTAAGCTTCAGGGATGGGAGATGAAGTTTCTATCTAAGATGTCTGAACTTAGGAATATTGAGACGGGATGGTTAAAGAAGTACCTTTACACATTGACAGTTACAACATTCGTCTTTTGGGGTACCCCAACATTTGTGTCTGTGGTCACTTTTGGGACTTGTATGCTTTTAGGAATCCCATTAGAGTCTGGCAAGGTATTATCTGCGCTTGCAACATTTAGGATTCTTCAAGAACCAATCTACAATCTTCCTGGCACAATCTCAATGTTGGTTCAAACAAAAGTTTCACTCGATAGAATAGTGTCATTCCTTCGTCTTGATGACTTAAAGTCTGATACTATAGAGAGGCTTCCAAGGGGTAGTTCTACTACAGCAGTTGAAATTGTCAATGCAAACTTTTCTTGGGATTCGTCTACTTCAAACGTCCCAACGTTGCAAGATATTAATTTCAAAGTCGAACATGGCATGAGAGTTGCTGTTTGTGGTACAGTAGGCTCAGGCAAGTCCAGTCTGCTATCTTGCATTCTAGGAGAGGTACCTAAAATATCAGGAAACCTGAGAGTGTGTGGTAGTAAGGCTTATGTAGCTCAGTCGCCATGGATACAAAGTGGAAAGATTGAGGAGAACATACTTTTTAGCAAGCAGATGGACAGAGAAAGGTACAAAAGAGTTCTTGAAGCATGTTGTCTAGAAAGAGACCTTGAAATTCTTGCATTTGGCGACCAGACAATAATAGGTGAAAGAGGAATAAATTTAAGTGGTGGACAAAAGCAGAGAATTCAAATTGCTCGTGCCTTATACCAAGATGCTGATATTTACTTATTTGATGATCCCTTTAGTGCAGTTGATGCCCATACAGGTTCTCATCTCTTCAAGGAATGTCTCCTTGGTGTTTTGAGTTCAAAAACAGTTTTTTATGTTACTCATCAAATTGAATTTTTACCAACGGCAGATCTTATCTTAGTCATGAAAGATGGAAGAATCACTCAAGCGGGAAAGTACAGTGAAATTCTACGGTCTGGAACCGACTTTATGGCACTTGTTGGTGCACATGAGGAAGCATTATCAGCCATTAATTATGTGGAAGAAGATACTTCTAGAAAAACTGATAGCAAGGAAGACGGGTCTATGATTAGTACTAACGACATTACACATGAGGAAGATAAAACAGATATACAAGACGGGAAAGCAGATGATGCCAATAAGTCAAACAGGCAACTTGTACAAGAAGAAGAAAGAGAGAAAGGAAGTTCAAGTTCTCTTTCAGATTCTTCAAACGGAAGTGATTTTTGGATGACATGGGCTACTCCTGTTTCAGAGGATATGGAGCCTCATGTTTCTACCTCTTGGTTGTTTATCATCTTTATTGCTTTGGCCTTTGGAAGCTCTTTGTGTGTCCTTTCGAGATCAGCCCTTCTCGTGGCAACTGGTTTTAAAGCTGCAACTGAACTTTTTGTTAAAATGCATACAAGCATCTTTCGTGCTCCCATGTCATTCTTTGATTCTACTCCAAGTGGAAGAATCCTCAATAGAACCTCCACAGACCAAAGTGCCACTGATATGGACATACCATTTCAAGTTGGAGCCTTTTGGATCAATGTAATTCAGCTGTTAGGAATCATTGTAGTAATGTCTCAAGTTGCATGGCAGGTTTTCATTATCTTTATACCTGTGATGGCTCTGTGCATCTGGTATGAGCAATATTATATTCCATTGGCACGAGAGCTATCACGGCTGATTGGAGTATGCAAGGCTCCGGTGATACAACTTTTATCTGAAACAATTTCTGGATCAACAACTATTAGGAGCTTCAATCAAGAGTCAAGATTCAAGGATGCCAATGTGAAATTGATTGATGCGTACTCTCGGCCCAGTGAACCTCCTCTAATTATTGAGGAAAACCGACCAGATTGTAGCTGGCCAGCATTCGGAGAAGTTGAACTTCATAACCTACAGGTTCGTTATGCACCACAACTGCCTCTTGTGTTGCGAGGTATTACATGTACTTTTTCGGGAGGAAAGAAAACTGGCATTGTTGGGAGAACAGGAAGTGGCAAATCAACTCTAATACAAACACTTTTCCGAATAGTCGATCCTGTAGCAGGTCATATTGTGATAGATAACGTCAACATAACAACGATTGGACTTCATGATCTGCGGTCCAAACTCAGTATCGTCCCTCAGGATCCTACAATGTTTGAAGGCACAGTGCGAAGCAATCTTGATCCCCTTGAAGAATACCCAGATGAAGACATTTGGGAGGCACTAGATAAATGTCAACTTGGAGATGAAGTGAGAAAAAAGGAAGGGAAGTTAGATTCACCAGTTAGTGAGAATGGAGAGAATTGGAGCATGGGTCAGAGGCAACTCGTTTGCCTTGGTCGAGTGCTACTCAAGAAAAGTAAAGTGTTGGTCCTTGACGAAGCCACTGCATCCATCGATACAACAATAGATAATTTAGTTCAACAGACCCTACGACAACATTTTTCTGAATGTACAGTCATTACAATTGCACATCGGGTAACTTCTGTCCTTGGAAGTGACATGGTTTTGCTTCTAAGTCATGGACTAATTGAAGAGTATGATACTCCCACAAGATTACTCGAAGACAATTCATCCTCCTTTTCTCAGCTAGTTGTAGAGTACACGAAAAGGTCGGGTTGTCGATGA 4182 40.65 MGSFDYSMQNLTNLFFHDPFFPVNSAVHFLLEPILAHSLSGLAHLVLLLVLCFSWVCLKLKAGCGERQSKTRRLNYNGTFMCCLVISVFNLVFFSLDYFYWYRNGWSEEYLVPLLDFGLKALAWGNVSQVSKTGKSKFAIHLRVWWVSYFALSCYGLAVDSVHYRQIHSLPIRYLVSDVMSVVSGLLIIYVGFFGMSVIEQDPLEEHLLNGETRYTNLGNGSIEPKNCKGDETVTPYETAGIFSILSFSWIGPLIAMGNKKALDLEDIPQLASCDAVSETFRILRNTLESECGTINQVTTLSLVKGLFYSAWKEIILTAAFAIISTLATYVGPYLIDTFVRYLNGHQDFEYEGYILVCVFFLAKLVECLAIRHWFFRVQQVGMKVRAALVAMIYNKSLTLSCQSRKQHTSGEIINFIAVDAERVCDFSWYMHDVWLVVFEVGFALLVLYKSLGLASIAAFVATISIMLINIPLGKLQEKFQDKIMESKDIRMKATSEILRNMRILKLQGWEMKFLSKMSELRNIETGWLKKYLYTLTVTTFVFWGTPTFVSVVTFGTCMLLGIPLESGKVLSALATFRILQEPIYNLPGTISMLVQTKVSLDRIVSFLRLDDLKSDTIERLPRGSSTTAVEIVNANFSWDSSTSNVPTLQDINFKVEHGMRVAVCGTVGSGKSSLLSCILGEVPKISGNLRVCGSKAYVAQSPWIQSGKIEENILFSKQMDRERYKRVLEACCLERDLEILAFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGVLSSKTVFYVTHQIEFLPTADLILVMKDGRITQAGKYSEILRSGTDFMALVGAHEEALSAINYVEEDTSRKTDSKEDGSMISTNDITHEEDKTDIQDGKADDANKSNRQLVQEEEREKGSSSSLSDSSNGSDFWMTWATPVSEDMEPHVSTSWLFIIFIALAFGSSLCVLSRSALLVATGFKAATELFVKMHTSIFRAPMSFFDSTPSGRILNRTSTDQSATDMDIPFQVGAFWINVIQLLGIIVVMSQVAWQVFIIFIPVMALCIWYEQYYIPLARELSRLIGVCKAPVIQLLSETISGSTTIRSFNQESRFKDANVKLIDAYSRPSEPPLIIEENRPDCSWPAFGEVELHNLQVRYAPQLPLVLRGITCTFSGGKKTGIVGRTGSGKSTLIQTLFRIVDPVAGHIVIDNVNITTIGLHDLRSKLSIVPQDPTMFEGTVRSNLDPLEEYPDEDIWEALDKCQLGDEVRKKEGKLDSPVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASIDTTIDNLVQQTLRQHFSECTVITIAHRVTSVLGSDMVLLLSHGLIEEYDTPTRLLEDNSSSFSQLVVEYTKRSGCR 1393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24293759 24299425 - Lsi02G018540.1 Lsi02g01854 656596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01854 1393 Gene3D - 1133 1387 IPR027417 -
Lsi02g01854 1393 Gene3D - 611 878 IPR027417 -
Lsi02g01854 1393 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 934 1127 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lsi02g01854 1393 Pfam ABC transporter 1167 1315 IPR003439 GO:0005524
Lsi02g01854 1393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 628 852 IPR027417 -
Lsi02g01854 1393 ProSitePatterns ABC transporters family signature. 756 770 IPR017871 GO:0005524
Lsi02g01854 1393 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1150 1384 IPR003439 GO:0005524
Lsi02g01854 1393 Pfam ABC transporter 649 783 IPR003439 GO:0005524
Lsi02g01854 1393 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1126 1391 - -
Lsi02g01854 1393 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 110 921 - -
Lsi02g01854 1393 SMART AAA_5 1176 1369 IPR003593 -
Lsi02g01854 1393 SMART AAA_5 658 831 IPR003593 -
Lsi02g01854 1393 MobiDBLite consensus disorder prediction 868 930 - -
Lsi02g01854 1393 CDD ABCC_MRP_domain1 630 831 - -
Lsi02g01854 1393 Gene3D ABC transporter type 1, transmembrane domain 294 610 IPR036640 GO:0005524|GO:0016021
Lsi02g01854 1393 CDD ABC_6TM_ABCC_D1 317 604 IPR044746 GO:0140359
Lsi02g01854 1393 SUPERFAMILY ABC transporter transmembrane region 950 1127 IPR036640 GO:0005524|GO:0016021
Lsi02g01854 1393 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 316 596 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lsi02g01854 1393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1142 1376 IPR027417 -
Lsi02g01854 1393 SUPERFAMILY ABC transporter transmembrane region 307 608 IPR036640 GO:0005524|GO:0016021
Lsi02g01854 1393 MobiDBLite consensus disorder prediction 868 922 - -
Lsi02g01854 1393 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 1126 1391 - -
Lsi02g01854 1393 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 110 921 - -
Lsi02g01854 1393 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 929 1128 - -
Lsi02g01854 1393 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 929 1128 - -
Lsi02g01854 1393 CDD ABC_6TM_ABCC_D2 934 1129 IPR044726 GO:0140359
Lsi02g01854 1393 CDD ABCC_MRP_domain2 1148 1368 - -
Lsi02g01854 1393 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 630 854 IPR003439 GO:0005524
Lsi02g01854 1393 Pfam ABC transporter transmembrane region 951 1125 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lsi02g01854 1393 Pfam ABC transporter transmembrane region 316 583 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lsi02g01854 1393 Gene3D ABC transporter type 1, transmembrane domain 924 1130 IPR036640 GO:0005524|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01854 - - K05666 csv:101213946 1816.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01854 Lsi-Chr2:24293759 Lsi09g01803 Lsi-Chr9:26765714 2.44E-09 dispersed
Lsi04g00652 Lsi-Chr4:5959399 Lsi02g01854 Lsi-Chr2:24293759 3.58E-09 dispersed
Lsi02g01854 Lsi-Chr2:24293759 Lsi02g01855 Lsi-Chr2:24302374 1.59E-09 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g626 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0021 Cone9ag0020 . . Lsi02g01854 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002483 1 1 1 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 1 1 3 2 2 3 2 1 3 6 6 59