Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01855 ATGGGTTCCTTTGATTACTCTATTCACAACTTAACTAACTTATTCTTTCATGACCCTTCTTCCCCTGTGAGCTCTGCTGCTCACTTTCTCCTTGAACCCATTTCAGCTCACGGCCTGTCTGGTTTGGCTCACTTGGTTTTGTTGCTCGTTCTTTGCTTCTCATTGGTGTGCTTAAAGTTTAAGGCAGGCTGTGGGGAACCTCAAAGAGAGACGAGGTGTTTGTACCATAAGGAAACGTTCATGTGTTGCCTCGTTGTTTCTGTTTTCAATCTTGTTTTCTTTTCTCTTGACTGCTTCTACTGGTATAGAAATGGGTGGTCTGAGGAAAATCTGGTGACCCTTCTGGATTTTGGGTTGAAAGTACTTGCATGGGGCACTGTTTCCTTTTGTTTACATTCTCAAGTTTCCAAAACTGGAAAATCAAACTTTGCAATTCATTTGAGAGTCTGGTGGGTTTCTTACTTCGCTGTTTCTTGTTACTGTCTTACTGTGGACTCTGTTCATTATAGCCAAACCCATTCCTTGCCCATTAGATACTTGGTTTCTGATGTCATGTCGGTTGTCTCTGGTTTGTTGATCATATATGTTGGGTTCTTTGGGCAAAGTGTGAGTGAACAAGACCCTCTTGAAGAACACCTTTTAAATGGTGAAACAAGGTATACTACTCTCAGTAATGGCAGTGTCGAGCCAAAGAACTGCAAAGGAGATGAAACCGTGACCCCTTACGAGACTGCTGGAATTTTCAGTATCCTTTCATTCTCTTGGATGGGTCCTCTGATTGCAACTGGAAACAAAAAGGCATTAGATCTTGAGGATATTCCTCAACTTGCAAGCCGTGATGCTGTTTCTGAGACCTTTCAGATTCTCAGAAACAAGCTTGAGTCTGAGTGTGGAACAATCAACAGAGTCACCACTCTTTCTCTGGTCAAGGGTCTACTCTACTCGGCTTGGAAAGAGATACTTTTAACTGCTGCGTTTGCCTTCATTTACACATTGGCTACATATGTTGGCCCCTATCTTATTGACACTTTTGTTCAATATCTCAACGGTTACCGAAATTTTGAAAATGAAGGCTATGTTTTGGTCTGTGTATTTTTCCTGGCAAAACTTGTGGAGTGTCTCGCAATGAGGCATTGGTTCTTTAGGGTGCAACAAGTCGGAATGAGGGTTCGAGCTGCATTGGTTGCAATGATCTATAACAAGGGTCTGACACTTTCTTGCCAGTCAAGACAACAACACACAAGTGGGGAGATCATCAACTTCATGACTGTAGATGCCGAGAGGGTTGGTGATTTCAGTTGGTATATGCATGATGTTTGGCTGGTGTTTTTTCAAGTTGGATTGGCCCTGTTGGTTTTGTATAAAAGTCTTGGTCTTGCTTCAATTTCAGCTTTTGTTGCAACTATAGCTATTATGTTGATAAATATCCCATTGGGAAAGTTGCAGGAGAAGTTTCAGGACAAGATAATGGAGTCAAAAGACACAAGGATGAAGGCGACTTCTGAAATCTTGAGAAATATGAGGATTCTTAAGCTTCAGGGATGGGAAATGAAGTTTCTATCTAAGATATCTGAACTTAGGAATATTGAGGCGGGATGGTTAAAGAAGTTCCTTTATACATTGTCAGTTACAACATTCGTCTTTTGGGGTGCCCCAACATTTGTGTCTGTAGTCACTTTTGGGACTTGTATGCTTGTGGGGATCCCATTAGAGTCTGGCAAAGTATTATCCGCGCTTGCAACATTTAGGATTCTTCAAGAACCAATCTACAATCTTCCTGACACAATCTCTATGGTGGTTCAAACGAAAGTTTCACTCGATAGAATAGTGTCATTCCTTCGTCTTGAGGACTTAAAGTCTGATACTATAGAGAGGCTTCCAAGGGGTAGTTCTACTACAGCAGTTGAGATTGTGAATGGGAACTTTTCTTGGGATCCATCTTCTTTAAACCCAACGTTGCGAGATATTAATTTCAAAGTCGAACATGGCATGAGAGTTGCTGTTTGTGGTACGGTAGGCTCAGGGAAGTCCAGCTTGCTATCTTGCATCCTGGGAGAAGTACCTAAAATATCAGGGACCCTGAGAGTGTGTGGTAGTAAGGCCTACGTAGCTCAATCACCATGGATACAGAGTGGAAAGATTGAGGAGAACATACTTTTTAGCAAAGAGATGGACAGAGAAAGGTACAAAAGAGTTCTTGAAGCATGTTGTCTAGAAAAGGACCTTGAAATTCTTGCATTTGGTGACCAGACGGTAATAGGAGAAAGAGGAATCAATTTAAGTGGTGGACAGAAGCAAAGAATTCAAATTGCTCGTGCCTTATATCAAGATGTTGATATTTACTTGTTTGATGATCCGTTCAGTGCAGTTGATGCTCATACAGGTTCTCACCTCTTCAAGGAATGTCTCCTTGGTGTTTTGAGTTCAAAAACAGTTATTTATGTTACTCATCAAGTAGAATTTTTACCAGCAGCTGATCTTATCTTGGTCATGAAAGATGGAAGAATCACTCAAGCTGGAAAGTATGAAGAAATTCTTCGCTCTGGAACCGACTTTATGGCACTTGTTGGCGCACACGAGGAAGCATTATCAACCATTAATTCTGTGGAAGGAGATTCTTCTAGAAAATCTACTACTAAGGAAGACAGATCTATGATTAGTAGTAATGGCATTACACATGAGGAAGATAGAACAGATATACAAGATGGGAAGGCAGTGGACGTGACGAAGTCAAAAGGGCAGCTTGTACAGGAAGAAGAGAGAGAGAAAGGAAAAGTTGGATTTTCAGTTTACTGGAAATATATTAAGTCTGCTTATGGTGGAGCTCTCGTGCCCATTATATTGTTTGGTCAGGTTCTCTTTCAGATTCTTCAAATTGGAAGTAATTATTGGATGGCATGGGCTACTCCTGTTTCAAAGGATACGGAGGCTCCTGTTTCTACCTCTCGATTGATTATCGTCTACGTTGCTTTGTCCATTGGAAGCTCCTTGTGTGTTCTCTTGAGGTCAGCTCTTCTCGTTACAGCTGGTTTTAAAGCAGCAACTGAACTATTCATTAAAATGCACACATGCATCTTTCGCGCCCCCATGTCATTCTTTGATGCTACTCCAAGTGGAAGAATTCTCAATAGAGCCTCCACGGACCAAAGTGCCCTTGATATGGATATACCATTTCGAGTTGGGTCCTTTTGCTTCAATATAATCCAGCTTCTAGGAATTATTGCAGTAATGTCTCAAGTTGCATGGCAGGTTTTCGTTATCTTTATCCCTGTGATGGCTCTGTGCATTTGGTATGAGCAATATTATATTCCATCGGCACGAGAATTATCACGGTTGATTGGAGTATGCAAAGCTCCAGTGATCCAACTATTCTCCGAAACAATTTCTGGATCAACAACTATTAGGAGCTTTGATCAAGAGTCTAGATTCCAAGACGCCAATATGAAACTGACAGATGCATACTCTCGGCCCAAGTTCCATACTGCAGCAGCAATGGAATGGCTTTGTTTCCGTCTTGATTTATTGTCTTCCATTACATTTGCTTCCTCTTTGATCTTTTTGATATCTATCCCTGTGGGAGTCATTGATCCAGGCATTGCCGGCTTGTCTGTAACCTATGGACTTAACCTCAATATGTTGCAAGCTTGGCTAATATGGAACCTTTGCAATATGGAGAACAAAATCATATCAGTCGAGAGAATATTTCAATATACTTCTATCCCTAGTGAGCCACCTCTAGTTATCGAGGAAAATCGACCAGATCGTAGCTGGCCAGCATTCGGAGAAGTTGAACTTCATAATTTGCAGGTTCGTTATGCACCACAACTGCCTCTTGTGTTGCGAGGTATTACATGTACTTTTCCAGGTGGAAAGAAAACTGGCATTGTTGGGAGAACAGGAAGTGGCAAATCAACTCTAATACAAACACTTTTTCGAATAGTCGATCCTGTAGCAGGTCATATTATGATTGATAACGTCAACATAACGACGATTGGACTTCATGATTTGCGATCCAAACTCAGTATCATCCCTCAGGATCCTACTATGTTTGAAGGTACCGTGCGGAGCAATCTTGATCCCCTTGAAGAATACGCAGATGAAGACATTTGGGAGGCACTGGATAAATGCCAACTTGGAGATGAAGTGAGAAAAAAGGAAGGAAAACTGGATTCAACAGTTAGTGAAAATGGAGATAATTGGAGCATGGGTCAGAGGCAACTCGTTTGCCTTGGTCGGGTGCTACTCAAGAAGAGTAAGGTGTTGGTCCTTGACGAAGCCACTGCATCAGTCGATACAGCTACAGATAATTTGATTCAACAAACTCTTCGACAACACTTTTCTGACTGTACAGTCATAACGATTGCACATCGAATAACTTCCGTCCTTAGCAGTGATATGGTTTTGCTTTTAAGTCATGGACTCATTGAGGAGTATGACACTCCAACAGGATTGCTCGAAGACAAGACATCCTCATTTTCTCAGCTAGTCGCAGAGTACACACAGAGATCGAGTTCTCGATGA 4521 41.56 MGSFDYSIHNLTNLFFHDPSSPVSSAAHFLLEPISAHGLSGLAHLVLLLVLCFSLVCLKFKAGCGEPQRETRCLYHKETFMCCLVVSVFNLVFFSLDCFYWYRNGWSEENLVTLLDFGLKVLAWGTVSFCLHSQVSKTGKSNFAIHLRVWWVSYFAVSCYCLTVDSVHYSQTHSLPIRYLVSDVMSVVSGLLIIYVGFFGQSVSEQDPLEEHLLNGETRYTTLSNGSVEPKNCKGDETVTPYETAGIFSILSFSWMGPLIATGNKKALDLEDIPQLASRDAVSETFQILRNKLESECGTINRVTTLSLVKGLLYSAWKEILLTAAFAFIYTLATYVGPYLIDTFVQYLNGYRNFENEGYVLVCVFFLAKLVECLAMRHWFFRVQQVGMRVRAALVAMIYNKGLTLSCQSRQQHTSGEIINFMTVDAERVGDFSWYMHDVWLVFFQVGLALLVLYKSLGLASISAFVATIAIMLINIPLGKLQEKFQDKIMESKDTRMKATSEILRNMRILKLQGWEMKFLSKISELRNIEAGWLKKFLYTLSVTTFVFWGAPTFVSVVTFGTCMLVGIPLESGKVLSALATFRILQEPIYNLPDTISMVVQTKVSLDRIVSFLRLEDLKSDTIERLPRGSSTTAVEIVNGNFSWDPSSLNPTLRDINFKVEHGMRVAVCGTVGSGKSSLLSCILGEVPKISGTLRVCGSKAYVAQSPWIQSGKIEENILFSKEMDRERYKRVLEACCLEKDLEILAFGDQTVIGERGINLSGGQKQRIQIARALYQDVDIYLFDDPFSAVDAHTGSHLFKECLLGVLSSKTVIYVTHQVEFLPAADLILVMKDGRITQAGKYEEILRSGTDFMALVGAHEEALSTINSVEGDSSRKSTTKEDRSMISSNGITHEEDRTDIQDGKAVDVTKSKGQLVQEEEREKGKVGFSVYWKYIKSAYGGALVPIILFGQVLFQILQIGSNYWMAWATPVSKDTEAPVSTSRLIIVYVALSIGSSLCVLLRSALLVTAGFKAATELFIKMHTCIFRAPMSFFDATPSGRILNRASTDQSALDMDIPFRVGSFCFNIIQLLGIIAVMSQVAWQVFVIFIPVMALCIWYEQYYIPSARELSRLIGVCKAPVIQLFSETISGSTTIRSFDQESRFQDANMKLTDAYSRPKFHTAAAMEWLCFRLDLLSSITFASSLIFLISIPVGVIDPGIAGLSVTYGLNLNMLQAWLIWNLCNMENKIISVERIFQYTSIPSEPPLVIEENRPDRSWPAFGEVELHNLQVRYAPQLPLVLRGITCTFPGGKKTGIVGRTGSGKSTLIQTLFRIVDPVAGHIMIDNVNITTIGLHDLRSKLSIIPQDPTMFEGTVRSNLDPLEEYADEDIWEALDKCQLGDEVRKKEGKLDSTVSENGDNWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVLSSDMVLLLSHGLIEEYDTPTGLLEDKTSSFSQLVAEYTQRSSSR 1506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24302374 24308761 - Lsi02G018550.1 Lsi02g01855 656597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01855 1506 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 321 601 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lsi02g01855 1506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1255 1488 IPR027417 -
Lsi02g01855 1506 Gene3D - 615 883 IPR027417 -
Lsi02g01855 1506 Pfam ABC transporter 653 787 IPR003439 GO:0005524
Lsi02g01855 1506 CDD ABCC_MRP_domain2 1261 1481 - -
Lsi02g01855 1506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 856 IPR027417 -
Lsi02g01855 1506 CDD ABCC_MRP_domain1 635 835 - -
Lsi02g01855 1506 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1263 1497 IPR003439 GO:0005524
Lsi02g01855 1506 SUPERFAMILY ABC transporter transmembrane region 943 1244 IPR036640 GO:0005524|GO:0016021
Lsi02g01855 1506 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 635 858 IPR003439 GO:0005524
Lsi02g01855 1506 Gene3D ABC transporter type 1, transmembrane domain 907 1244 IPR036640 GO:0005524|GO:0016021
Lsi02g01855 1506 Gene3D ABC transporter type 1, transmembrane domain 294 614 IPR036640 GO:0005524|GO:0016021
Lsi02g01855 1506 CDD ABC_6TM_ABCC_D1 322 609 IPR044746 GO:0140359
Lsi02g01855 1506 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 130 1505 - -
Lsi02g01855 1506 SMART AAA_5 662 835 IPR003593 -
Lsi02g01855 1506 SMART AAA_5 1289 1474 IPR003593 -
Lsi02g01855 1506 SUPERFAMILY ABC transporter transmembrane region 312 616 IPR036640 GO:0005524|GO:0016021
Lsi02g01855 1506 CDD ABC_6TM_ABCC_D2 944 1238 IPR044726 GO:0140359
Lsi02g01855 1506 Pfam ABC transporter transmembrane region 322 588 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lsi02g01855 1506 Pfam ABC transporter transmembrane region 946 1187 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lsi02g01855 1506 ProSitePatterns ABC transporters family signature. 760 774 IPR017871 GO:0005524
Lsi02g01855 1506 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 946 1226 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lsi02g01855 1506 Pfam ABC transporter 1280 1428 IPR003439 GO:0005524
Lsi02g01855 1506 Gene3D - 1246 1499 IPR027417 -
Lsi02g01855 1506 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 130 1505 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01855 - - K05666 csv:101213946 2729.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01855 Lsi-Chr2:24302374 Lsi09g01803 Lsi-Chr9:26765714 0 dispersed
Lsi03g01259 Lsi-Chr3:23215950 Lsi02g01855 Lsi-Chr2:24302374 1.27E-168 dispersed
Lsi04g00653 Lsi-Chr4:5959697 Lsi02g01855 Lsi-Chr2:24302374 9.34E-61 dispersed
Lsi02g01854 Lsi-Chr2:24293759 Lsi02g01855 Lsi-Chr2:24302374 1.59E-09 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g625 . Blo03g01469 . Bda09g00417 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g01855 . . Cme06g02771 . . . . . . Bma07g01268 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002483 1 1 1 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 1 1 3 2 2 3 2 1 3 6 6 59