Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01858 ATGGCTTCAGATCAGAACCATGACAATCTCGAGTGGGCATTGCACGCTCTCGGACCCGACAGCCATGGCCCCCACAGCCTGTCCTTCAATCTCTCTCAATCCACTTCTTGCTGCCATGTCGAAACCGAAAACTCCATGAAGGTAGACATCTCTAAGGATGGCATTCCATACTTCTCTTGCTTTCTCACAGCTTTGAGCTGCCACAGCTCCCTCAGAAGCTTGGAGTTTCATCTTGCCAATTGGGAACTTGAGCAAATGCGAGAGCTTTGTAGGTTGTTTAAGGATAACTCGGGCATTAGACAGGTTGTGTTTCGACGAAATAGATTGAGTAATGAATGCTTGGTGGAGCTGTGTTGTGTTTTGAGGACTAACAGAGGGATTAAGGAGCTTATGTTTTCAGAATGTGGGATTGGATCAGTTGGGGTTGGTTTGATTGCTTCTGGTTTGAAGACGAATGATTCGTTAGAGGAGTTTCAGGTTTGGGAGGATTCGATCGGGTCGAAAGGAATGGAAGAACTCTCACAGATGGTTGAAGAAAACACAACTCTGAAGCTTTTGTCAATTTTTGACTCAAATTCAGTCACAGTGACCCCATTGATATCTGCAGTTTTGACAATGAATAGGAATATGGAAGTGCACATTTGGAATGGAGAAAATGGTGGAAAAAGTTCAAAGGTGGTTGAGTTTGTACCTGGGAATAGCACACTCAGAATTTATAGGCTTGACATAAATGGTGCTTGCAGGGTTGCTAATGCGCTTGGGTTAAACTCGACGGTTAAAACGCTCGACATGACTGGTATCCGGCTGAAATCCCGGTGGGCAAAAGAATTCCGTTGGGCATTGGAGCAAAATCATTGCTTGAGGGAGGTAAAACTATCAAAGAGTCACTTAAAAGATGAGGCAATTGTGCATATAGGAGCTGGACTTTTCAAGAACAAGCACCTGCAGAACTTATTTCTTGATGGAAACTTATTTACGGGCATCGGAGTCGAACATTTACTCTGCCCTTTGAGCCGATTTTCGACCCTGCAACTTCAAGCTAACATAACTCTCAAATATGTAATATTTGGAGGTCGAAAGAACAAGATAGGAAGAGAAGGGCTTGCAGCGATTCTACATATGCTTACAACAAATGAAACTCTAACTCATCTCGGGATATATGATGATCATAGCTTGAGACCTAATGACATAGTCAGAATTTTCAGGAGTTTAGAGAAGAATGCATCCTTAACACACTTATCATTACATGGTTGTAAAGGTGTTGATGGAGACATGGTGTTGCAGACAATAATGGGGATGCTAGAGGTAAATCCTTGGATCGAAGACATCGACCTTGCAGGAACTCCTCTTCAGAATTCTGGGAAAGCCGACAGAGTTTACCAAAGGTTAGGACAGAACGGGAACACTGATCTCGAACCCCAGGTAGATTCCCTGGACATGACCTTGACAGAGCCAAAAAGTTGTAGGATTTTCTTCTGTGGGCAAGAATATGCAGGTAATAACATAGTTTCTTCGATATAA 1521 43.13 MASDQNHDNLEWALHALGPDSHGPHSLSFNLSQSTSCCHVETENSMKVDISKDGIPYFSCFLTALSCHSSLRSLEFHLANWELEQMRELCRLFKDNSGIRQVVFRRNRLSNECLVELCCVLRTNRGIKELMFSECGIGSVGVGLIASGLKTNDSLEEFQVWEDSIGSKGMEELSQMVEENTTLKLLSIFDSNSVTVTPLISAVLTMNRNMEVHIWNGENGGKSSKVVEFVPGNSTLRIYRLDINGACRVANALGLNSTVKTLDMTGIRLKSRWAKEFRWALEQNHCLREVKLSKSHLKDEAIVHIGAGLFKNKHLQNLFLDGNLFTGIGVEHLLCPLSRFSTLQLQANITLKYVIFGGRKNKIGREGLAAILHMLTTNETLTHLGIYDDHSLRPNDIVRIFRSLEKNASLTHLSLHGCKGVDGDMVLQTIMGMLEVNPWIEDIDLAGTPLQNSGKADRVYQRLGQNGNTDLEPQVDSLDMTLTEPKSCRIFFCGQEYAGNNIVSSI 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24348822 24350342 + Lsi02G018580.1 Lsi02g01858 656600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01858 506 Gene3D Ribonuclease Inhibitor 63 213 IPR032675 -
Lsi02g01858 506 Gene3D Ribonuclease Inhibitor 347 470 IPR032675 -
Lsi02g01858 506 PANTHER PROTEIN TORNADO 1 1 501 - -
Lsi02g01858 506 SUPERFAMILY RNI-like 58 454 - -
Lsi02g01858 506 Gene3D Ribonuclease Inhibitor 222 346 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01858 - - - csv:101215001 911.368
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g607 . . Bda07g00394 . . . . . . . . . Car01g00970 Car09g00896 Sed07g2724 Cpe06g00796 Cpe02g00804 Bhi09g01727 Tan01g3153 Cmetu01g0554 . Hepe01g1229 Mch11g1238 . . . . . . . . Cone6ag0031 Cone9ag0031 . . Lsi02g01858 Csa07g00975 . . . . . . Bpe11g00572 . . Bma14g00307 . Cmo01g01142 Cmo09g00987 . . . . . . . . . . . . . Cla09g02047 Cam09g2135 Cec09g2201 . . . . . . Chy01g01082 Cme01g00963
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006977 1 1 2 1 1 1 2 1 1 2 1 1 0 1 1 2 1 3 2 1 1 1 1 1 1 2 1 1 1 1 37