Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01862 ATGAACGCCAAAACCCAAGCTCTGTTACTCAAGATCTTCTTCCTTATCTTCGCTTTCAACACCCTAACTCTCTGCATTTACTTCACTTCCCACTCCAAAACCTCCCCTCCCACTTCCCCTCATCGGAATCCCACTTCGGAAAACCACTTCCCTTTCCCCGAAAACCCACATTCTTCCAAGCCCTGGCCCATCTTGCCTTCTTATCTCCCTTGGTCTCACTCCGCTGTCCCTCCGCGTTCCTGTGAGGCCTATTTCGGCAATGGCTTCACCCGCCGTGTAGATCTTTTCAAACCTAAACTCGCCGGAAAACTCGCCGGATGGTTCCGGTGCTGGTATAGTGAGACTCTTGAGAGCTCGATATGTGAGGGAGCGAGAGTGCGAATGTGGCCGGAGAGAATTTCTATGTCCCGTGGAGGCGAGCGGATTGAAGAGGTGATCGGAAGAAAGGAAGAGATGGAGTTGCCGGAATTTCGTAGCGGCGCTTTTGAGCTTGACGGCGGCGAGGAGAGGGTTCTTGCCGATGAGAAGTTTCTTAATCGGTTCGTGCCGGAAGGGGAAATTCAGAAGCACACTATGCGCGCATTGTTCGGATCGTTTCGAGTTGTTTCTGAGAGTGATTTCGAATGCCAAGAGTGGATCGAGGAGCCTGTGCTTCTGGTGACGAGGTTTGAGTATGCAAATCTTTTTCACACTATTACAGATTGGTATAGTGCTTATGTGGCTTCGAGAGTCGTCGGGTTGCCTAATCGACCTCATCTGGTTTTCATCGACGGGCATTGTAAGACACCTTTGGAAGAGACATGGAAGGCATTGTTTTCAAGTCTTAGATATGCCAAAAATTTCAGCGGACCGGTTTGTTTTCGCCACGCAATCTTCTCACCTCTCGGATATGAAACTGCACTATTCAAGGGTCTGACTGAGGGTATCAATTGTCATGGAGGGTCATCTCATGATCTTTGGCTAGAACCTGATGACCAGAAGACTGCTAGATTATCTGAGTTTGGAGAAATGGTTAGAGCAGCTTTTGGTTTCCCAGTTGACAGACAAGTCGAAAGGCCAACCTCAATTCACAACGTTCTCTTTGTGCGCCGTGAGGATTATTTAGCGCATCCTCGACATGGCGGTAGAGTTGAATCCAGACTTACTAATGAACAACAAGTCTTTGATTCTTTGCAGAACTGGGCATCTAATCACAGAGAGTGTAAAATAAACTTAGTGAATGGGTTGTTTGCACACATGTCGATGAAGGAACAACTCCGAGCCATCCAAGATGCATCGGTCATTATTGGGGCTCACGGTGCAGGCCTTACTCACATAATATCTGCCTTACCAAAAACTGTGATCTTGGAAATCATCAGCAGTCTATTTAGAAGGCCTCATTTTGCATTGATTGCTCAATGGAAAGGCTTGGAATACCATGCCATCAATCTCTCAGGATCACACGCGGATCCAGAAGTCGTTATCGAACACCTTTCGCGCATCATGACGAGCCTTGGGTGCTGA 1503 47.84 MNAKTQALLLKIFFLIFAFNTLTLCIYFTSHSKTSPPTSPHRNPTSENHFPFPENPHSSKPWPILPSYLPWSHSAVPPRSCEAYFGNGFTRRVDLFKPKLAGKLAGWFRCWYSETLESSICEGARVRMWPERISMSRGGERIEEVIGRKEEMELPEFRSGAFELDGGEERVLADEKFLNRFVPEGEIQKHTMRALFGSFRVVSESDFECQEWIEEPVLLVTRFEYANLFHTITDWYSAYVASRVVGLPNRPHLVFIDGHCKTPLEETWKALFSSLRYAKNFSGPVCFRHAIFSPLGYETALFKGLTEGINCHGGSSHDLWLEPDDQKTARLSEFGEMVRAAFGFPVDRQVERPTSIHNVLFVRREDYLAHPRHGGRVESRLTNEQQVFDSLQNWASNHRECKINLVNGLFAHMSMKEQLRAIQDASVIIGAHGAGLTHIISALPKTVILEIISSLFRRPHFALIAQWKGLEYHAINLSGSHADPEVVIEHLSRIMTSLGC 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24374295 24377726 - Lsi02G018620.1 Lsi02g01862 656604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01862 500 PANTHER GLYCOSYLTRANSFERASE 1 500 IPR007657 GO:0016757
Lsi02g01862 500 MobiDBLite consensus disorder prediction 34 53 - -
Lsi02g01862 500 PANTHER - 1 500 - -
Lsi02g01862 500 MobiDBLite consensus disorder prediction 34 54 - -
Lsi02g01862 500 Pfam Glycosyltransferase 61 340 449 IPR007657 GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01862 K03714 XYLT; glycoprotein 2-beta-D-xylosyltransferase [EC:2.4.2.38] - csv:101217309 966.837
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g597 . Blo03g01466 Bda07g00391 . . . . . . . . Cma09g00982 . Car09g00893 Sed07g2720 Cpe06g00793 . Bhi09g01723 Tan01g3149 Cmetu01g1530 . Hepe01g1232 Mch11g1234 . . . . . . . . . . Cone14ag1193 Cone15ag1213 Lsi02g01862 Csa07g00981 . . . . . . Bpe11g00569 . . Bma14g00310 . . Cmo09g00984 . . . . . . . . . . . . . Cla09g02043 Cam09g2132 Cec09g2197 . . . . . . Chy01g01077 Cme01g00970
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008290 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34