Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01863 ATGCCTGAGAAAGAGAGCCACAATGTTGTTACAGAGCCTCGTTTGGTGGCTAGAAAGTTTCTGGCTAGGCCTCAGCATGAAGGGTTGGGCGCCATTGTTAGAAGGAGCATTGGAAGGTTTGAGCTGAAATACTTTGACCCTTTTCTAGTTTTGGATGAATTTTCAGTTACTGCCCCAGCTGGGTTCCCAGATCATCCACATAGAGGATTTGAGACAGTGACCTACATGCTGCAGGGAAGTGTGACACATGAAGATTTTGAAGGCCACAAGGGAACAATAGGAGCAGGTGACTTGCAATGGATGACTGCAGGTAGAGGAATTGTACATTCAGAAATGCCTGCAGCTCAAGTTATCACCTTTTTGTTTCCTCCCTTCAGCTTGAATTTTCCTTCTAGTTCATTAAATCTTTTAGAAGTACTTGTAATCCCAAATAGAATGAAAAGGATTTCTGAAAGGGTAATTATGAGGATTGAGCCAAATTACCAAGAAGTTTCAAGCAAGGGAATTCCAGAAGCTTCAAAAGATGGAGTGAGAGTGAAAGTCATAGCTGGTGAGGCATTGGGAGCAAAATCACCAATCTACACAAGAACTCCAACCATGTACTTGGACTTCACTCTCAAGCCAAAAGCTCATCTTCAACAGCCAATCCCCTCATCTTGGAACGCATTCGTGTACATTCTAGAAGGTGAAGGCGTCTTTGGAAGCTCAAAGGCGACATCGACGACAGCACATAACCTTCTTCTTCTCGGGATCGGGGACAGTCTAGAGGTCTGGAATAAGTCAGCCAAGCCTCTTAGGTTCATTTTGGTAGGAGGTGAACCATTGGGTGAGCCTGTTGCCCAATTTGGGCCATTTGTGATGAACACTCAAGAAGAAATTGACCAAACAATTGATGATTTTGATAATTATACCAATGGGTTTGAGAAAGCAAGGCATTGGATATCAGAAGCTGGAATTTCTCTTGGGTTCTAA 972 43.42 MPEKESHNVVTEPRLVARKFLARPQHEGLGAIVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGSVTHEDFEGHKGTIGAGDLQWMTAGRGIVHSEMPAAQVITFLFPPFSLNFPSSSLNLLEVLVIPNRMKRISERVIMRIEPNYQEVSSKGIPEASKDGVRVKVIAGEALGAKSPIYTRTPTMYLDFTLKPKAHLQQPIPSSWNAFVYILEGEGVFGSSKATSTTAHNLLLLGIGDSLEVWNKSAKPLRFILVGGEPLGEPVAQFGPFVMNTQEEIDQTIDDFDNYTNGFEKARHWISEAGISLGF 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24382275 24386083 - Lsi02G018630.1 Lsi02g01863 656605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01863 323 CDD cupin_pirin_N 33 114 - -
Lsi02g01863 323 Pfam Pirin C-terminal cupin domain 201 305 IPR008778 -
Lsi02g01863 323 PANTHER OS09G0484800 PROTEIN 157 319 - -
Lsi02g01863 323 PIRSF Pirin 149 314 IPR012093 -
Lsi02g01863 323 PIRSF Pirin 12 136 IPR012093 -
Lsi02g01863 323 PANTHER PIRIN-RELATED 157 319 IPR012093 -
Lsi02g01863 323 Pfam Pirin 34 116 IPR003829 -
Lsi02g01863 323 PANTHER PIRIN-RELATED 3 118 IPR012093 -
Lsi02g01863 323 CDD cupin_pirin_C 198 274 - -
Lsi02g01863 323 Gene3D Jelly Rolls 12 279 IPR014710 -
Lsi02g01863 323 SUPERFAMILY RmlC-like cupins 14 315 IPR011051 -
Lsi02g01863 323 PANTHER OS09G0484800 PROTEIN 3 118 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g01863 Lsi05g00531 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00089 Lsi-Chr7:986229 Lsi02g01863 Lsi-Chr2:24382275 1.35E-129 transposed
Lsi02g01863 Lsi-Chr2:24382275 Lsi05g00531 Lsi-Chr5:6642421 6.62E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01863 K06911 - csv:101216351 536.954