Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g01863 | ATGCCTGAGAAAGAGAGCCACAATGTTGTTACAGAGCCTCGTTTGGTGGCTAGAAAGTTTCTGGCTAGGCCTCAGCATGAAGGGTTGGGCGCCATTGTTAGAAGGAGCATTGGAAGGTTTGAGCTGAAATACTTTGACCCTTTTCTAGTTTTGGATGAATTTTCAGTTACTGCCCCAGCTGGGTTCCCAGATCATCCACATAGAGGATTTGAGACAGTGACCTACATGCTGCAGGGAAGTGTGACACATGAAGATTTTGAAGGCCACAAGGGAACAATAGGAGCAGGTGACTTGCAATGGATGACTGCAGGTAGAGGAATTGTACATTCAGAAATGCCTGCAGCTCAAGTTATCACCTTTTTGTTTCCTCCCTTCAGCTTGAATTTTCCTTCTAGTTCATTAAATCTTTTAGAAGTACTTGTAATCCCAAATAGAATGAAAAGGATTTCTGAAAGGGTAATTATGAGGATTGAGCCAAATTACCAAGAAGTTTCAAGCAAGGGAATTCCAGAAGCTTCAAAAGATGGAGTGAGAGTGAAAGTCATAGCTGGTGAGGCATTGGGAGCAAAATCACCAATCTACACAAGAACTCCAACCATGTACTTGGACTTCACTCTCAAGCCAAAAGCTCATCTTCAACAGCCAATCCCCTCATCTTGGAACGCATTCGTGTACATTCTAGAAGGTGAAGGCGTCTTTGGAAGCTCAAAGGCGACATCGACGACAGCACATAACCTTCTTCTTCTCGGGATCGGGGACAGTCTAGAGGTCTGGAATAAGTCAGCCAAGCCTCTTAGGTTCATTTTGGTAGGAGGTGAACCATTGGGTGAGCCTGTTGCCCAATTTGGGCCATTTGTGATGAACACTCAAGAAGAAATTGACCAAACAATTGATGATTTTGATAATTATACCAATGGGTTTGAGAAAGCAAGGCATTGGATATCAGAAGCTGGAATTTCTCTTGGGTTCTAA | 972 | 43.42 | MPEKESHNVVTEPRLVARKFLARPQHEGLGAIVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGSVTHEDFEGHKGTIGAGDLQWMTAGRGIVHSEMPAAQVITFLFPPFSLNFPSSSLNLLEVLVIPNRMKRISERVIMRIEPNYQEVSSKGIPEASKDGVRVKVIAGEALGAKSPIYTRTPTMYLDFTLKPKAHLQQPIPSSWNAFVYILEGEGVFGSSKATSTTAHNLLLLGIGDSLEVWNKSAKPLRFILVGGEPLGEPVAQFGPFVMNTQEEIDQTIDDFDNYTNGFEKARHWISEAGISLGF | 323 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 24382275 | 24386083 | - | Lsi02G018630.1 | Lsi02g01863 | 656605 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g01863 | 323 | CDD | cupin_pirin_N | 33 | 114 | - | - | |
Lsi02g01863 | 323 | Pfam | Pirin C-terminal cupin domain | 201 | 305 | IPR008778 | - | |
Lsi02g01863 | 323 | PANTHER | OS09G0484800 PROTEIN | 157 | 319 | - | - | |
Lsi02g01863 | 323 | PIRSF | Pirin | 149 | 314 | IPR012093 | - | |
Lsi02g01863 | 323 | PIRSF | Pirin | 12 | 136 | IPR012093 | - | |
Lsi02g01863 | 323 | PANTHER | PIRIN-RELATED | 157 | 319 | IPR012093 | - | |
Lsi02g01863 | 323 | Pfam | Pirin | 34 | 116 | IPR003829 | - | |
Lsi02g01863 | 323 | PANTHER | PIRIN-RELATED | 3 | 118 | IPR012093 | - | |
Lsi02g01863 | 323 | CDD | cupin_pirin_C | 198 | 274 | - | - | |
Lsi02g01863 | 323 | Gene3D | Jelly Rolls | 12 | 279 | IPR014710 | - | |
Lsi02g01863 | 323 | SUPERFAMILY | RmlC-like cupins | 14 | 315 | IPR011051 | - | |
Lsi02g01863 | 323 | PANTHER | OS09G0484800 PROTEIN | 3 | 118 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi02g01863 | Lsi05g00531 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi07g00089 | Lsi-Chr7:986229 | Lsi02g01863 | Lsi-Chr2:24382275 | 1.35E-129 | transposed | |
Lsi02g01863 | Lsi-Chr2:24382275 | Lsi05g00531 | Lsi-Chr5:6642421 | 6.62E-66 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g01863 | K06911 | - | csv:101216351 | 536.954 |