Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01864 ATGAGTTGCTGGAAGAATTTTCCGGCAATGTGTTCTTCTTCCTTCTCTCTCCTTCTTCTGTTTCCTCTGTTTCTTCACTCGTTCGTGGTGCTGGTATCTGCTCAGGGATCTAATAATACAGCTCTATGGCAGACTCTGAGTGGAAATGCTCCATTCGTTGTGGCTCGCGGTGGATTTTCAGGGCTTTTTCCTGATTCATGTGGAGTTGCCTACAATTTTGCAGTTATGGTTAGTGTTCCTGATGTGATCTTATGGTGCGATGTGCAATTAACCAAAGATGGAGTTGGAATTTGTCTCCCGGATCTGAGGCTTGACAATGCTACTGATGCTCCGACTATTCTAGGGACAAATCGCAGCAGTGTCTATCTTGTTAATGGTGCCCGTACTGAGGGATTGTTTACGGTCGATTTCGATCTCAAAGAACTGGAAAATGTTTCTCTTGTTCAAGGCATCTATTCTCGATCTAACAGGTTCGATGGCAATGAGTTTGTTATTCTCACTCCTGAAGACGTGGCTAATCAGTTCAACCCACCAGGATTTTGGCTAAATATTCAGCATGATGTGTTCTTCACGCAACATAACTTGAGCATGAGGAACTTTGTACTTTCTGTATCCAGACGCATCATTGTTAACTATATATCATCACCAGAGGTGGGATTTCTTAGAAGTATAGCTGCAAGAGTTAATCCCCGCACAACAAAGTTGATCCTTCGGGTCTTAGGACCAACTGATACTGAGGTTACTACCAATCAGACTTATGCCTCTCTCTTAGGCAATCTCACCTTTATCAAGACATTTGCTTCTGGAATTCTTGTTCCTAAGACTTATATATGGCCCATGGGTAACGATGGTTACATACAACCTCAAACCTCTCTTGTTTCTAATGCTCATAAAGCACAGCTGGAAATTTTTGCATCAGAGTTCTATAGTGACCTTCCATTAAGCTACAACTACAGTTATGATCCCGTTACTGAATACCTGTCTTACTTTGACAATGGTAAATTTTCAGTTGATGGTGTGCTCACTGATTTCCCTATTTCTCCATCGTCAGCTATTGACTGTTTTGCTCATTTGGATAAGAATGCCAAAAGTCAAGCCAAGCCCTTGGTTATTTCAAAATTTGGAGCTAGTGGAGACTTTCCTGCTTGCACAGATTTGGCGTACTCGAATGCTATTTCAGATGGTGTTGAAGTACTTGACTGTCCTGTTCAAATAACAAACGATGGAATACCATTTTGCATGAGCTCAATTAATCTCATCGACAGCACAACAATATCTCAATCACCATTTATTACCCGTTCAAAAAAAATTCCCGAAATTAGTCCTAACGAGGGAATCTTTGCTTTTGACTTAACATGGGAAGAGATTCAAGGCCTGACCCCGTCAATATTGAACCCTTATACGAAGTTCACGTTGTTCCGAAACCCAAGGTTCAGAAACAGTGGGAAATTCTTAACACTACCTGATTTCTTGGCCTTGGCAAAGAATGCAAGCACTCTTTCTGGTATCTTGATCCAAATTGAGAATGCAGCCTATCTTGCTAAGAATCAGAGTTTAAGTGTAACTGATGCGGTCTTTGATTCCTTGAGCAAAGCTGGTTATGATAATCAGACAGCCCTTAAAGTATTGATTCAATCTCCAGATAGCGCTGTTCTAATAAAATTTAAACAGGAAAATAAAAGTTACGAGCTTGTTTACGAAGTTGACATGCCAATTAGTGATGTGCTCAATACAACTGTTGTGGACATAAAGAGTTTTGCCAACTCTGTGACTATCAGCAAGCTCTCTGTCTTACCTGAAAATCAGCTATTTCTCACTGGATCTACAGATGTTGTGAAGAAGCTGCAAGCACTTAATCTCTCTGTATATGTGGAAACCTTCGACAATGAATTTGTCTCTCAAGCATGGGATTTCTTCTCAGATGCAACAGTAGAGATCAACTCATATGTTTCGGGAGCCAACATTGATGGAGTCATCACCGGCTTTCCAAAGACATCTGCTAGATATAAAAAGAACCGATGTTTAACAATGAAAGAAACACCTAATTACATGAGCCCTGTCCAGCCTGGTAGCTTGTTGCAACTTATTACTAAAGACTACATGCCTCCAAAGATAGCTCCGAGCCCGGTTCTGAATAACACAGACGTAGCCGAGTCACCATTGCCTTCGGTTTCGGCCAAAGCCCCAGCACCTGCTGTGAACGGTGGCTCTACAGCAGCACCTCCAACTTCTAAACCCAATGGACAACCTAAGCTTAGAGCTGGAGCAGGCTTCTTGTTCTTGAACGTTGCCATACTTTCCATTGCTCTTCTTCCATTCTGA 2322 41.73 MSCWKNFPAMCSSSFSLLLLFPLFLHSFVVLVSAQGSNNTALWQTLSGNAPFVVARGGFSGLFPDSCGVAYNFAVMVSVPDVILWCDVQLTKDGVGICLPDLRLDNATDAPTILGTNRSSVYLVNGARTEGLFTVDFDLKELENVSLVQGIYSRSNRFDGNEFVILTPEDVANQFNPPGFWLNIQHDVFFTQHNLSMRNFVLSVSRRIIVNYISSPEVGFLRSIAARVNPRTTKLILRVLGPTDTEVTTNQTYASLLGNLTFIKTFASGILVPKTYIWPMGNDGYIQPQTSLVSNAHKAQLEIFASEFYSDLPLSYNYSYDPVTEYLSYFDNGKFSVDGVLTDFPISPSSAIDCFAHLDKNAKSQAKPLVISKFGASGDFPACTDLAYSNAISDGVEVLDCPVQITNDGIPFCMSSINLIDSTTISQSPFITRSKKIPEISPNEGIFAFDLTWEEIQGLTPSILNPYTKFTLFRNPRFRNSGKFLTLPDFLALAKNASTLSGILIQIENAAYLAKNQSLSVTDAVFDSLSKAGYDNQTALKVLIQSPDSAVLIKFKQENKSYELVYEVDMPISDVLNTTVVDIKSFANSVTISKLSVLPENQLFLTGSTDVVKKLQALNLSVYVETFDNEFVSQAWDFFSDATVEINSYVSGANIDGVITGFPKTSARYKKNRCLTMKETPNYMSPVQPGSLLQLITKDYMPPKIAPSPVLNNTDVAESPLPSVSAKAPAPAVNGGSTAAPPTSKPNGQPKLRAGAGFLFLNVAILSIALLPF 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24391716 24399489 - Lsi02G018640.1 Lsi02g01864 656606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01864 773 Pfam Glycerophosphoryl diester phosphodiesterase family 86 196 IPR030395 GO:0006629|GO:0008081
Lsi02g01864 773 Pfam Glycerophosphoryl diester phosphodiesterase family 375 664 IPR030395 GO:0006629|GO:0008081
Lsi02g01864 773 Gene3D Phosphatidylinositol (PI) phosphodiesterase 366 669 IPR017946 GO:0006629|GO:0008081
Lsi02g01864 773 Gene3D Phosphatidylinositol (PI) phosphodiesterase 49 348 IPR017946 GO:0006629|GO:0008081
Lsi02g01864 773 ProSiteProfiles GP-PDE domain profile. 368 670 IPR030395 GO:0006629|GO:0008081
Lsi02g01864 773 ProSiteProfiles GP-PDE domain profile. 51 352 IPR030395 GO:0006629|GO:0008081
Lsi02g01864 773 SUPERFAMILY PLC-like phosphodiesterases 50 346 IPR017946 GO:0006629|GO:0008081
Lsi02g01864 773 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL3 24 752 - -
Lsi02g01864 773 MobiDBLite consensus disorder prediction 716 749 - -
Lsi02g01864 773 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 24 752 - -
Lsi02g01864 773 CDD GDPD_SHV3_repeat_1 51 351 - -
Lsi02g01864 773 CDD GDPD_SHV3_repeat_2 368 669 - -
Lsi02g01864 773 SUPERFAMILY PLC-like phosphodiesterases 367 669 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00702 Lsi-Chr1:5604647 Lsi02g01864 Lsi-Chr2:24391716 1.63E-07 dispersed
Lsi02g01864 Lsi-Chr2:24391716 Lsi02g00120 Lsi-Chr2:987684 5.44E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01864 - - bhj:120086180 1343.95