Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01865 ATGGGAGTTTTCGAAACGGTGAGAAATATCGGCAGCGATCACGCCCAGGTCGTCCCCTTGACGTTGTTCGTCGCCGTTCTCTGTTTTTCTTTGGTTATTGGCCACTTGCTTGAAGAAAATCGATGGGTTAATGAATCCATCACCGCCATTATCATTGGAGTTGTTACTGGAACGATCATATTGGTCTGCAGCAAGGGGAAAAATTCTCATATCCTAACTTTCAATGAAGAAGTGTTCTTCATATATCTTCTTCCACCGATAATTTTCAATGCTGGATTTCAAGTTAAAAAGAAGCAGTTCTTCCATAACTTCTTGACCATTATGCTGTTTGGGGTGATTGGTGTTTTTATATCTGCACTTATTATAACGGCTGGTATAAGCCAAATCTCTTACAAATTAATTCTTCATTCAACACTGCAACTTTGTCCATATATCATTATTGGGACACTGACAGATTTTAATTCATGTGAAATGGTTCTTTATGCATTGATTAGGCAGCCAGTGGCTGTTTCCGAGAATGGGCCTTCATGGTCTGTCAGCACGGGACTATCTATAGGTGCTATTTTTTCATCCACGGATACAGTATGCACCCTGCAGGTACTACATCAAGAGGAAACGCCTTTACTCTACAGCCTAGTCTTTGGGGAAGGAGTGGTGAACGATGCAACATCAGTTGTTCTCTTCAATGCAGTCCAGAAGATTGATATCTCCAGGCTTAACAACAAGACAGCCTTTCATCTTTTGGGAGATTTTTGTTACTTATTTTCAACTAGCACTGTCCTTGGAGTGACTACCGGGCTTCTAACAGCATATATCCTGAAAACCTTATATTTCGGGAGACATTCAAGTGTGCGTGAGCTTGCTATAATGGTTCTAATGGCCTACCTATCGTACATGCTAGCAGAGTTACTGGAGTTGAGTGGAATACTCACAGTTTTCTTTTGTGGGATTATCATGTCGCACTATGCATGGCATAATGTGACTGATAGTTCAAGAATTACCACCAGGCAAGTACAGACACAACTTCTAGATGCATGCTGA 1041 41.21 MGVFETVRNIGSDHAQVVPLTLFVAVLCFSLVIGHLLEENRWVNESITAIIIGVVTGTIILVCSKGKNSHILTFNEEVFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVIGVFISALIITAGISQISYKLILHSTLQLCPYIIIGTLTDFNSCEMVLYALIRQPVAVSENGPSWSVSTGLSIGAIFSSTDTVCTLQVLHQEETPLLYSLVFGEGVVNDATSVVLFNAVQKIDISRLNNKTAFHLLGDFCYLFSTSTVLGVTTGLLTAYILKTLYFGRHSSVRELAIMVLMAYLSYMLAELLELSGILTVFFCGIIMSHYAWHNVTDSSRITTRQVQTQLLDAC 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24426756 24431584 + Lsi02G018650.1 Lsi02g01865 656607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01865 346 Pfam Sodium/hydrogen exchanger family 25 327 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lsi02g01865 346 PANTHER SODIUM/HYDROGEN EXCHANGER 11 150 - -
Lsi02g01865 346 PANTHER SODIUM/HYDROGEN EXCHANGER 178 338 - -
Lsi02g01865 346 Gene3D - 180 230 - -
Lsi02g01865 346 PANTHER SODIUM/HYDROGEN EXCHANGER 11 150 IPR018422 GO:0006812|GO:0015299|GO:0016021
Lsi02g01865 346 PANTHER SODIUM/HYDROGEN EXCHANGER 178 338 IPR018422 GO:0006812|GO:0015299|GO:0016021
Lsi02g01865 346 PRINTS Na+/H+ exchanger signature 107 115 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lsi02g01865 346 PRINTS Na+/H+ exchanger signature 78 89 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lsi02g01865 346 PRINTS Na+/H+ exchanger signature 92 106 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01865 Lsi-Chr2:24426756 Lsi06g00185 Lsi-Chr6:1992647 9.70E-135 dispersed
Lsi02g01865 Lsi-Chr2:24426756 Lsi09g01394 Lsi-Chr9:21975581 2.02E-102 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01865 - - csv:101217775 489.96