Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01866 ATGTCTATGCATGTATTTGCAATGATGTCGTTCGTTGCTGAAACTGCAATATTTCTTTATGTGGGCATGGATGCTCTTGACATTGAGAAGTGGAAGATAAATAAACTAAGCTTGTGGAAGTTGCTTGGTACATATACCACCATAGTTTTCTTGATATTGCTTGGTCGTGCTGCCTTTGTATTTCCCCTGTCTGCTATATCTAATTACTTCATTAAGCGTGAAGATAGATCGTCGTCGCCTTCTATGATCTCATTTAAACAGCAGATCATTATATGGTGGGCTGGACTGATGAGAGGAGCTGTGTCCATTGCTCTGGCTTTCAAACAGGCACTTTACCTATTGAATGTGGAAACGATCATCTATTTTGAAGTTCACATATTCCGGGGTTACAGTGGATCCAACCCATGCAACAATGATTACCAACACCACAATTGTTGTACTCTTCACCACAGTGGTAATGCAAGCAACTCCAGACCAAAGTTCACTGAAGATGACATAACTCTCCCTTTGCTCTCCATGGAAGAGTCTGCTGCGACGAATGTCCTCCGGGCCAAGGATAGTTTGTCGATGTTAATAGAGAGGCCTGTTTACACCATACATTTCTTTTGGAGGAAATTTGATGATTCCTATATGAGACCTATTTTTGGAGGGCCTCGCCACAACCAACCACCTGGTGGTTCT 681 42.29 MSMHVFAMMSFVAETAIFLYVGMDALDIEKWKINKLSLWKLLGTYTTIVFLILLGRAAFVFPLSAISNYFIKREDRSSSPSMISFKQQIIIWWAGLMRGAVSIALAFKQALYLLNVETIIYFEVHIFRGYSGSNPCNNDYQHHNCCTLHHSGNASNSRPKFTEDDITLPLLSMEESAATNVLRAKDSLSMLIERPVYTIHFFWRKFDDSYMRPIFGGPRHNQPPGGS 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24431593 24434033 + Lsi02G018660.1 Lsi02g01866 656608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01866 227 PANTHER SODIUM/HYDROGEN EXCHANGER 4 221 IPR018422 GO:0006812|GO:0015299|GO:0016021
Lsi02g01866 227 PANTHER SODIUM/HYDROGEN EXCHANGER 4 221 - -
Lsi02g01866 227 Pfam Sodium/hydrogen exchanger family 7 107 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01866 Lsi-Chr2:24431593 Lsi02g02351 Lsi-Chr2:30142221 2.13E-29 dispersed
Lsi02g01866 Lsi-Chr2:24431593 Lsi09g01394 Lsi-Chr9:21975581 2.89E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01866 - - csv:101217775 326.635