Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01873 ATGCGAGTGTTGCTCATATGCATGGCATCTCTATTGTATTGCTATTCCATAGCTTCAAAACTTCCCAAAGGCAAACTCAGGCTCCTTTCTCTCCTCCCAATCTTCTCTCTCTTCGCCGTCCTTCCTCTCGACCTCTCCTACGTCGTCCTCACGAGCGGCATCACCATATTCGTCACCTGGCTTACGACCTTTAAGCTTCTTCAATTCTCATTCGATTTGGGTCCTCTAGCTTCCAACCCACCATTGTCATTCCCTCTTTTTGCCTCCATTGCTTTCTTACCAACTAGAATCAAGGATATCAAAACAACCCCATATGTTCAAAAACATAGAAAAGATTCAAATGCACCTCAAGAACTTGACCAAGAACCACCACCCAAGTTGCCTCTAAACTTGCCAGCTAAAGTGTTGTTATTTGCATTATTGGTCTTGGGCAAGAGCCATGTTGATCTTGTCCACCCCATTGTAAAATTATGCCTCAATTGTGGAATATTGTATTTCTACTTAGACATGGTTATGAGTTTGTCTAATGTTTTTGTTCGATCGAGCTTCGGTGTTGAGGTCAGACGACCGTTTGACGAGCCATATCTCGCAACATCACTTCAAAATTTTTGGGGTCGGAGGTGGAATCGATTAGTATCTGAAACTTTGCACAACACCATCTATAAACCAGTTCGTTACGACGTCGGGAGCCCGCGATGGATGGCAGTGTTCGTAGTGTTTGTGGTGTCGGGGTTAATGCATGAGCTTTTGTTCTACTACATCATCAGAGTGGTTCCGACGTGGGAAGTCACATGGTTCTTTATTATTCACGGAGTGTGTGTGGCCATGGAGATTGAATTAAAGAGTGCGTTAGGGAAAAAATGGCAATTTCATTGGGCAGTGACCGGACCACTCACGATGACATTTATAGCAATCACCGCTCAT 924 44.16 MRVLLICMASLLYCYSIASKLPKGKLRLLSLLPIFSLFAVLPLDLSYVVLTSGITIFVTWLTTFKLLQFSFDLGPLASNPPLSFPLFASIAFLPTRIKDIKTTPYVQKHRKDSNAPQELDQEPPPKLPLNLPAKVLLFALLVLGKSHVDLVHPIVKLCLNCGILYFYLDMVMSLSNVFVRSSFGVEVRRPFDEPYLATSLQNFWGRRWNRLVSETLHNTIYKPVRYDVGSPRWMAVFVVFVVSGLMHELLFYYIIRVVPTWEVTWFFIIHGVCVAMEIELKSALGKKWQFHWAVTGPLTMTFIAITAH 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24529337 24530471 + Lsi02G018730.1 Lsi02g01873 656615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01873 308 PANTHER LONG-CHAIN-ALCOHOL O-FATTY-ACYLTRANSFERASE 3-RELATED 2 307 IPR044851 GO:0006629|GO:0008374
Lsi02g01873 308 MobiDBLite consensus disorder prediction 104 124 - -
Lsi02g01873 308 PANTHER (MEMBRANE BOUND O-ACYL TRANSFERASE) FAMILY PROTEIN, PUTATIVE-RELATED 2 307 - -
Lsi02g01873 308 Pfam Membrane bound O-acyl transferase family 191 268 IPR032805 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01873 - - - csv:101217464 552.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01871 Lsi-Chr2:24494413 Lsi02g01873 Lsi-Chr2:24529337 2.48E-98 dispersed
Lsi02g01873 Lsi-Chr2:24529337 Lsi03g01185 Lsi-Chr3:22272619 1.00E-66 dispersed
Lsi02g01872 Lsi-Chr2:24508286 Lsi02g01873 Lsi-Chr2:24529337 5.01E-109 tandem
Lsi02g01873 Lsi-Chr2:24529337 Lsi02g01874 Lsi-Chr2:24553578 1.04E-145 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g589 . . . . . . . . . . Cma01g01108 Cma09g00978 Car01g00979 . Sed05g3441 . Cpe02g00793 Bhi09g01704 Tan01g3135 Cmetu01g0339 . Hepe01g1242 Mch11g1222 . . . . . . . . . . . . Lsi02g01873 Csa07g01001 . . . . . . Bpe11g00560 . . Bma14g00177 . Cmo01g01153 Cmo09g00977 . . . . . . . . . . . . . Cla09g01038 Cam09g1093 Cec09g1093 Cco09g1115 . . . . . Chy01g01065 Cme01g00989
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005618 0 2 0 0 0 2 0 2 2 2 2 2 2 2 2 3 2 0 1 1 2 0 1 4 0 2 0 1 3 0 40