Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi02g01877 | ATGGCGTATACTTTGGAATCATGGACGAAGGAATACAATGAAGCTTTGAAACTCTCTGAAGATATCAATGGCATGATTTCTGAGAGAAGTTCACTTGCTGCATCTGGACCAGAAGCTCAGCGTCATGCCTCAGCTATACGCAGGAAGATCACAATATTGGGTACCAGGCTTGATACCTTGCAGACTCAGTTACCCAAGCTTCAAGGAAAGCAACCAATACCAGAGAAAGAGATGAATCGCCGCAGGGATATGATTGCAAATTTGAGATCAAAAGCTAAGCAGATGGCTTCAACTTTGAACATGTCTAACTTTGCTAACCGGGATAGCTTACTTGGTCCAGAAATAAAGCCAGCTGATGTCATGAACAGAACAGAAGGCTTAGACAACCGAGGCCTCGTTGAGCAAGATGAAGGCCTTGAGAAACTGGAAGGGACTATAATTAGCACAAAACATATTGCATTAGCCGTCAATGAAGAACTTAACCTTCACACGAGACTTATTGATGATTTGGATGAACATGTCGATGTTACAGATTCCAGATTACGGCGAGTGCAGAAGAGGCTGGCAATATTGAACAAGCGGACTAAGGGTGGTTGCACTTGCATGTCAATGATTTTATCAGTTGTTGGGATTGTCGTTCTTATCGCTGTCATATGGCTACTCATCAAGTATTTGTAA | 678 | 42.63 | MAYTLESWTKEYNEALKLSEDINGMISERSSLAASGPEAQRHASAIRRKITILGTRLDTLQTQLPKLQGKQPIPEKEMNRRRDMIANLRSKAKQMASTLNMSNFANRDSLLGPEIKPADVMNRTEGLDNRGLVEQDEGLEKLEGTIISTKHIALAVNEELNLHTRLIDDLDEHVDVTDSRLRRVQKRLAILNKRTKGGCTCMSMILSVVGIVVLIAVIWLLIKYL | 225 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 24587361 | 24589885 | - | Lsi02G018770.1 | Lsi02g01877 | 656619 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi02g01877 | 225 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 134 | 191 | IPR000727 | - | |
| Lsi02g01877 | 225 | PANTHER | TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED | 6 | 220 | - | - | |
| Lsi02g01877 | 225 | SMART | tSNARE_6 | 123 | 191 | IPR000727 | - | |
| Lsi02g01877 | 225 | PANTHER | SYNTAXIN | 6 | 220 | IPR045242 | - | |
| Lsi02g01877 | 225 | SUPERFAMILY | SNARE fusion complex | 133 | 190 | - | - | |
| Lsi02g01877 | 225 | Gene3D | - | 131 | 193 | - | - | |
| Lsi02g01877 | 225 | Pfam | SNARE domain | 166 | 216 | IPR000727 | - | |
| Lsi02g01877 | 225 | CDD | SNARE_Qc | 134 | 189 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi09g01890 | Lsi-Chr9:27715983 | Lsi02g01877 | Lsi-Chr2:24587361 | 1.84E-08 | transposed | |
| Lsi02g01877 | Lsi-Chr2:24587361 | Lsi05g00543 | Lsi-Chr5:6752568 | 1.08E-116 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi02g01877 | K08503 | - | csv:101208669 | 398.667 |