Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01877 ATGGCGTATACTTTGGAATCATGGACGAAGGAATACAATGAAGCTTTGAAACTCTCTGAAGATATCAATGGCATGATTTCTGAGAGAAGTTCACTTGCTGCATCTGGACCAGAAGCTCAGCGTCATGCCTCAGCTATACGCAGGAAGATCACAATATTGGGTACCAGGCTTGATACCTTGCAGACTCAGTTACCCAAGCTTCAAGGAAAGCAACCAATACCAGAGAAAGAGATGAATCGCCGCAGGGATATGATTGCAAATTTGAGATCAAAAGCTAAGCAGATGGCTTCAACTTTGAACATGTCTAACTTTGCTAACCGGGATAGCTTACTTGGTCCAGAAATAAAGCCAGCTGATGTCATGAACAGAACAGAAGGCTTAGACAACCGAGGCCTCGTTGAGCAAGATGAAGGCCTTGAGAAACTGGAAGGGACTATAATTAGCACAAAACATATTGCATTAGCCGTCAATGAAGAACTTAACCTTCACACGAGACTTATTGATGATTTGGATGAACATGTCGATGTTACAGATTCCAGATTACGGCGAGTGCAGAAGAGGCTGGCAATATTGAACAAGCGGACTAAGGGTGGTTGCACTTGCATGTCAATGATTTTATCAGTTGTTGGGATTGTCGTTCTTATCGCTGTCATATGGCTACTCATCAAGTATTTGTAA 678 42.63 MAYTLESWTKEYNEALKLSEDINGMISERSSLAASGPEAQRHASAIRRKITILGTRLDTLQTQLPKLQGKQPIPEKEMNRRRDMIANLRSKAKQMASTLNMSNFANRDSLLGPEIKPADVMNRTEGLDNRGLVEQDEGLEKLEGTIISTKHIALAVNEELNLHTRLIDDLDEHVDVTDSRLRRVQKRLAILNKRTKGGCTCMSMILSVVGIVVLIAVIWLLIKYL 225
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 24587361 24589885 - Lsi02G018770.1 Lsi02g01877 656619
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01877 225 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 134 191 IPR000727 -
Lsi02g01877 225 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 6 220 - -
Lsi02g01877 225 SMART tSNARE_6 123 191 IPR000727 -
Lsi02g01877 225 PANTHER SYNTAXIN 6 220 IPR045242 -
Lsi02g01877 225 SUPERFAMILY SNARE fusion complex 133 190 - -
Lsi02g01877 225 Gene3D - 131 193 - -
Lsi02g01877 225 Pfam SNARE domain 166 216 IPR000727 -
Lsi02g01877 225 CDD SNARE_Qc 134 189 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01890 Lsi-Chr9:27715983 Lsi02g01877 Lsi-Chr2:24587361 1.84E-08 transposed
Lsi02g01877 Lsi-Chr2:24587361 Lsi05g00543 Lsi-Chr5:6752568 1.08E-116 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01877 K08503 - csv:101208669 398.667