Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01880 ATGGCTCCCAAGGGCGACAACGTCGTCGTTTCGAACATGAAACTCGAACGAATGCTCAGCATGAAAGGAGGTAAAGGCGAAACGAGCTATGCTAACAACTCTCAAGCTCAGGCTCAACATGCGAGATCAATGCTTCATCTTCTAAAAGAAACATTGGACGGAGTTCATTTAAACTCGCCGGAACTGCCGTTCGTGGTGGTGGATCTCGGCTGCAGCTGCGGCAGCAACACCATTTACATCGTCGACGTCATCATAAAGCACATTATAAAGCGCTTTGAGGCTTTGGCCGTCGACCCGCCGGAGTTCACCGCCTTTTTCTCCGATCTCCCTGGAAATGACTTCAATACACTCTTCCAGCTCCTCCCGCCTTTGGCCACTTATGGCGGCAGCATGGAGGAATGCCTCGCCGCCGACAACCATCGCTCCTACTTCGCTGCCGGCGTTCCTGGCTCCTTCTACCGCCGTCTGTTTCCGGCCAGGTCCATCGACGTACCAGAGACGGTGGTGGATGCGAGATCGACGGCATACAACAGAGGGAGGGTGTTCATCCACGGCGCAAACGAGGCGGCGGCGGCGGCTTACCGGAAGCAATTTCAGACGGACTTGGCCGGATTTCTGTGGGCCAGGGCCCACGAGCTGAAAAGAGGTGGGTCCATGTTCCTTGTCTGCTTGGGCCGGACCTCACTGGACCCCACCGACCAAGGTGGAGCCGGCCTCCTCTTTGGGACCCACTTTCAGGATGCTTGGGATGATCTTGTCCAAGAGGGATTGATAAGCAATGAGAAACGTGATAGTTTCAACATTCCAGTGTATGCACCAAGTTTGCAAGACTTCAAAGAGGTAGTAGAAGCCGATGGATCATTTTCCATAAACAAACTAGAAGTTTTCAAAGGAGGCAGTCCATTGGTAGTGAACCAACCAGACGATGCAGCAGAGGTCGGTCGAGCTTTGGCCAACAGCTGTCGAAGTGTTTCTGGTGTCCTCGTCGACGCCCATATCGGCGATCGGCTAAGCGAAGAGCTCTTCTATCGAGTCGAACGTAGAGCCACAAACCATGCTAAAGACCTTCTTGAGAAGCTTCAATTCTTTCACATTGTGGCATCACTATCCCTTGCATAA 1119 52.9 MAPKGDNVVVSNMKLERMLSMKGGKGETSYANNSQAQAQHARSMLHLLKETLDGVHLNSPELPFVVVDLGCSCGSNTIYIVDVIIKHIIKRFEALAVDPPEFTAFFSDLPGNDFNTLFQLLPPLATYGGSMEECLAADNHRSYFAAGVPGSFYRRLFPARSIDVPETVVDARSTAYNRGRVFIHGANEAAAAAYRKQFQTDLAGFLWARAHELKRGGSMFLVCLGRTSLDPTDQGGAGLLFGTHFQDAWDDLVQEGLISNEKRDSFNIPVYAPSLQDFKEVVEADGSFSINKLEVFKGGSPLVVNQPDDAAEVGRALANSCRSVSGVLVDAHIGDRLSEELFYRVERRATNHAKDLLEKLQFFHIVASLSLA 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24638290 24643590 + Lsi02G018800.1 Lsi02g01880 656622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01880 372 Pfam SAM dependent carboxyl methyltransferase 62 370 IPR005299 GO:0008168
Lsi02g01880 372 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 13 370 IPR029063 -
Lsi02g01880 372 PANTHER INDOLE-3-ACETATE O-METHYLTRANSFERASE 1 10 371 - -
Lsi02g01880 372 Gene3D - 18 354 IPR042086 -
Lsi02g01880 372 Gene3D Vaccinia Virus protein VP39 33 299 IPR029063 -
Lsi02g01880 372 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 10 371 IPR005299 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01880 K18848 IAMT1; indole-3-acetate O-methyltransferase [EC:2.1.1.278] - csv:101213472 714.916
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01880 Lsi-Chr2:24638290 Lsi04g00998 Lsi-Chr4:11033746 8.88E-48 dispersed
Lsi02g01880 Lsi-Chr2:24638290 Lsi01g00657 Lsi-Chr1:5292389 1.81E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g578 Blo03g00540 . Bda07g00379 . . . . . . . Cma01g01114 Cma09g00971 Car01g00983 Car09g00885 Sed04g3702 Cpe06g00785 Cpe02g00790 Bhi09g01696 Tan01g3124 Cmetu01g0770 . Hepe01g1248 Mch11g1217 . . . . . . . . Cone6ag0043 Cone9ag0050 . . Lsi02g01880 . . . . . . . . . . Bma14g00322 . Cmo01g01159 Cmo09g00971 . . . . . . . . . . . . . Cla09g01034 Cam09g1089 Cec09g1088 Cco09g1109 . . Cre09g1054 . . Chy01g01056 Cme01g00997
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004302 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 2 2 1 3 2 2 2 42