Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01883 ATGGGAAAATCAGGGTGTTTCTTGTTGATTTTGTTGTTGGGTTTGATGTTATTAGAGAAGAAAATAGTTGAAGGAAATAAGGTTAATGTTGTTCCAAGCATCATAGTATTTGGAGATTCTTCAGTAGATTCAGGAAACAACAACCATATTTCAACTGTTTTAAGAAGTGATTTTGCTCCATATGGTCGTGATTTTGAAGGAGGAAAAGCCACAGGAAGATTTTGTAATGGAAAAATTGTTACTGATTTTATCTCTGAAGCTTTTGGGATTAAACCCACAATCCCAGCCTACTTAGATCCTTCTTATAATATCACTCATTTTGCCTCTGGTGTTTGCTTTGCTTCTGCTGGAACTGGCTATGATAATGCTACTTCCGGTATTTTTTCAGTGATTCCTCTATGGAAAGAACTCCAATATTACAGAGAATACCAAAAGAAATTGAGAGACTATCTTGGCCCATCAAAGGCCAACACTACCATTTCCCAATCCCTTTATCTCATAAGCTTAGGCACCAATGACTTCCTAGAAAACTACTTCCTCCTCCCTCCAAGATCCTCTGAGTTTTCACTCCAAGACTATCAAAATTTTCTTGCTCGTGCTGCCGAGGGGTTTGTTCGGGAGCTCTATGCGCTCGGTGCACGGAAGATGTCGATCGGGGGGCTCCCGCCGATGGGGTGCTTGCCATTGGAAAGGAGCTCAACGATTATTTTTGGAGGTGGTGGTGAGTGTGTTGAGAAGTACAATAAAGTTGCAAGGGATTTCAATGCCAAATTGATGGGGTTGGTGGAGATGATGAAGGAGGAATTGAAAGGGATTAAAATTGTGTTTTCCAATCCATTTGATGTTCTTTATGATATGATTCAACATCCTAGTTACTTTGTCCTCTACTTACCATTGAGAAGGTGGATACTTCATGATTGGAGTGACGATCATTGTGTAAAGTTGTTGAAAAATTGCTACATTGCGATCCCGAATGATGGAAAGGTAATCATAGTGGACTCAGTGGTTCCAACAGTACCTGAAACCACAAATGCAATAAAATCCATAGCCCAATGCGATGTGCTTATGATGACTCAAAATCCAGGAGGAAAGGAGCGAACTCAAGATGAATTCAAGGCTCTCGCAACCAAAGCTGGGTTTAAACATGTCATATTTCAGTGTTTTTTATCTGATATCTGGGTTATAGAGTTTCTTAAAAATTAA 1203 39.65 MGKSGCFLLILLLGLMLLEKKIVEGNKVNVVPSIIVFGDSSVDSGNNNHISTVLRSDFAPYGRDFEGGKATGRFCNGKIVTDFISEAFGIKPTIPAYLDPSYNITHFASGVCFASAGTGYDNATSGIFSVIPLWKELQYYREYQKKLRDYLGPSKANTTISQSLYLISLGTNDFLENYFLLPPRSSEFSLQDYQNFLARAAEGFVRELYALGARKMSIGGLPPMGCLPLERSSTIIFGGGGECVEKYNKVARDFNAKLMGLVEMMKEELKGIKIVFSNPFDVLYDMIQHPSYFVLYLPLRRWILHDWSDDHCVKLLKNCYIAIPNDGKVIIVDSVVPTVPETTNAIKSIAQCDVLMMTQNPGGKERTQDEFKALATKAGFKHVIFQCFLSDIWVIEFLKN 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24695568 24698316 + Lsi02G018830.1 Lsi02g01883 656625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01883 400 Gene3D SGNH hydrolase 25 341 IPR036514 -
Lsi02g01883 400 Pfam GDSL-like Lipase/Acylhydrolase 34 275 IPR001087 GO:0016788
Lsi02g01883 400 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 299 399 IPR016461 GO:0008168
Lsi02g01883 400 PANTHER ANTER-SPECIFIC PROLINE-RICH PROTEIN APG-LIKE 11 294 - -
Lsi02g01883 400 CDD SGNH_plant_lipase_like 32 293 IPR035669 -
Lsi02g01883 400 PANTHER GDSL ESTERASE/LIPASE EXL3 11 294 - -
Lsi02g01883 400 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 301 397 IPR029063 -
Lsi02g01883 400 Pfam O-methyltransferase domain 301 381 IPR001077 GO:0008171
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01883 - - - csv:101207130 513.457
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01883 Lsi-Chr2:24695568 Lsi11g01665 Lsi-Chr11:24914533 3.34E-123 dispersed
Lsi02g01883 Lsi-Chr2:24695568 Lsi01g00270 Lsi-Chr1:2404698 5.22E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g568 . . . . . . Bma10g00574 . . . Cma01g01115 . Car01g00985 . . . Cpe02g00788 Bhi09g01691 Tan01g3119 . . Hepe01g1251 Mch11g1212 . . . . . . . . . . Cone14ag1177 Cone15ag1190 Lsi02g01883 . . . Blo07g00885 . Bda05g00700 . . . . . . Cmo01g01161 . . . . . . . . . . . . . . Cla09g01031 Cam09g1086 Cec09g1085 Cco09g1106 . . Cre09g1051 . . Chy01g01052 Cme01g01002
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000811 2 3 2 3 2 3 3 3 3 3 2 3 4 3 3 4 3 6 3 3 3 3 3 3 3 4 3 3 3 2 91