Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01893 ATGGACTGGACCAGAGGCCCCGCCGTCGGCCGCGGCTCCTCCGCCACCGTCTATTTGGCCACAGCCGCCTCCTCCGGCCACCAATTCGCCGTCAAATCCACCGACCTCTCTTCATCGGCGCTGTTGCAGAAGGAACACGCTCTTCTCTCCAATTTGAGCTCCCCATACCTAATAAAGTGCCTAGGTTTCGACATTGAAACCGAAGCCTTCAATCCGCCGGTGTTCAATTTGTTCATGGAGTATTTGCCGGAGGGGACACTGTGGGATGCGATTCAGAGCAACGGCGGCCGGATGGAGGAATCGACGATCGGAGTATTTTCGCGTCAGATTCTCAAAGGATTAGAATACCTTCACGCTAATGGATTGGCACATTGCGATATCAAGAGCCGGAATCTGTTACTGAGTGATGAGGGTTTGAAAATCGCTGATCTAGGTTGTGCGAAATTTGTCGATGGAATTTCCGGTAATGGAGTTAGGGCTTTTTCTGGTTCGCCGGCGTTCATGGCGCCGGAGGTTGCGAGAGGTGAAGAACAGGGGTTCCCGGCGGATGTTTGGGCTTTTGGATGTACAGTCATTGAAATGGCTACTGGCGATCATCCGTGGCCGGAGATGGAGGATCCTGTATCTGCGTTGTATCGGATTGGATTTTCCGACCAGTTACCGGAGGTTCCACGGTGGTTGTCGAAGAGTGCGAGGGATTTTGTCGCCAAGTGTTTGATAAAAGACCCGAAAGAAAGATGGACTGTGAAACAGCTTCTTGAGCATCCGTTTCTTCAGGGATTTGATTCTGAATCGGAGATTGAATGCTCAAGGATGAAAACGGTGAATTCTTCTCCGGGCTGTGTTTTGGATCAGAGCTTTTGGGATTCAATGGAAGATTTGGAGACTCCATTGAAGGTGACCCATCAAGCTTCTTTGGCGGAAGGTCCGGCTGAGAGGATTAGAAGTTTGGCTGGTAATTTGTCTTCTGATTGGGATTTGGAATGGGATGATCGAGATTGGGTTTTGATCAGAAATAATGGCGTCGGCGGTGGAAGCCATGGAAATGGATCTGTGAGCTCAGATTTTTCTTCTACAGTTGAAGAAGAAGAAATTTTGAACTTGGAATTGGAAGAAAATTCTGTATTGTTCTGTTTAGTTGATGATGATTTTAGTGTTGTGAACAGTAGGAATGGAGGATTAGAAATGGAATTTGAGAGTGATTTTATGTTAGAAACTTCGAACGCCGCTACACCGGAGCTTTCTTTTTGGAGGAATTGCCAATTCAAAGCTCCAAATATCCGTCCACACTTCGCCGCTAGAGTTCCGGCCGGCAGTGTAGTTTCAGAGATTGTAATGGAAGCGCCGCCGTTCTTCATCGCTGTTTCTTCTTCTTCCTCTTCTTCTCAGACTGTATTTCGATTACTTTCATCGTCGTCTCATACCAGCTCTCTCAGTTGTCTTCGCAATAATCACTACAAAAGTCGTCTTCTCAAACTCAAGTCCTCTGGTAAGTTCGCAGTTCGTGCCTCATTTGGTGGTGACTCAGTTGTGACTTTGCTGGATTACGGTGCTGGTAATGTTCGTAGTGTGAGGAATGCAATTCGTTACCTTGGCTTCGACATCAAAGATGTGCAAACTCCAGAAGACATTCTTAATGCAAAACGCCTAATATTTCCTGGAGTTGGGGCATTTGCTCCTGCCATGGATGTGCTAAACAGTAAAGGCATGGCCGAAGCACTTTGCACTTATATTGAGAATGATCGCCCATTTTTAGGCATTTGTCTTGGGCTTCAACTACTCTTCGAGTCAAGCGAGGAGAATGGACCAGTAAAAGGTCTTGGCTTAATACCTGGTGTGGTTGGACGTTTTGACTCTTCCAATGGTTTTAGGGTACCCCATATTGGGTGGAATGCTTTGGAGATCTCTGAGGACTCTGAGATATTGGATGAAATTTCTAACCGTCATGTCTACTTTGTTCACTCTTACCGTGCTATGCCATCAGACAAGAACAAGGACTGGATCTCTTCTACTTGCAGCTATGGTGACAGGTTTATAGCTTCAGTTAGAAGGGGAAATGTTCATGCAGTTCAATTCCACCCAGAAAAAAGTGGAGGGGACCTTGTTGTCACCAAAGGGGACCAATATGATGTAAGGGAGCAGACAGAAGAGAATGAGGTGAGGAACCTTGGCAAGCCGGTAGAGCTTGCTGGACAATACTACAAGGATGGTGCTGATGAGGTCAGTTTCTTGAATATAACTGGTTTTCGTGACTTTCCTCTTGGCGACTTGCCAATGTTGCAGGTGCTGAGATACACATCAGAAAATGTTTTTGTACCATTGACTGTTGGGGGCGGGATTAGAGATTTTGAGGATGCAAATGGCAGACACTATTCTAGCTTGGAGGTTGCTTCAGAATATTTTAGATCTGGAGCTGATAAAATATCTATTGGAAGTGATGCAGTTTATGCTGCCGAAGAATATTTAAGAACTGGCGTAAAGACAGGAAAGAGCAGCTTGGAGCAGATTTCTAAGGTTTATGGAAACCAGGCTGTTGTGGTAAGTATTGATCCTCGTAGAGTGTACCTTAAAAGTCCCAATGATGTGGAGTTCAAAGTCATACGAGTAACAAACCCAGGTCCTAATGGAGAAGAGTATGCATGGTATCAGTGTACAGTTAATGGAGGTCGAGAAGGTCGACCTATTGGAGCTTATGAGCTTGCAAAAGCAGTCGAGGAGCTTGGAGCTGGAGAAATTCTGCTGAACTGCATAGATTGTGATGGTCAAGGAAAAGGATTTGATACAGATCTGGTAAAGCTGATATCAGATTCTGTGAGCATCCCCGTTATTGCCAGCAGTGGTGCTGGCTCTCCTCACCATTTCTCTGAGGTCTTTAACAAAACGAATGCATCCGCTGCTCTTGCTGCTGGCATTTTTCATCGCAAGGAGGTGCCTATTCAGTCGGTAAAAGAGCATTTATTGAAGGAAGGCATAGAAGTCAGAATCTAA 2988 45.88 MDWTRGPAVGRGSSATVYLATAASSGHQFAVKSTDLSSSALLQKEHALLSNLSSPYLIKCLGFDIETEAFNPPVFNLFMEYLPEGTLWDAIQSNGGRMEESTIGVFSRQILKGLEYLHANGLAHCDIKSRNLLLSDEGLKIADLGCAKFVDGISGNGVRAFSGSPAFMAPEVARGEEQGFPADVWAFGCTVIEMATGDHPWPEMEDPVSALYRIGFSDQLPEVPRWLSKSARDFVAKCLIKDPKERWTVKQLLEHPFLQGFDSESEIECSRMKTVNSSPGCVLDQSFWDSMEDLETPLKVTHQASLAEGPAERIRSLAGNLSSDWDLEWDDRDWVLIRNNGVGGGSHGNGSVSSDFSSTVEEEEILNLELEENSVLFCLVDDDFSVVNSRNGGLEMEFESDFMLETSNAATPELSFWRNCQFKAPNIRPHFAARVPAGSVVSEIVMEAPPFFIAVSSSSSSSQTVFRLLSSSSHTSSLSCLRNNHYKSRLLKLKSSGKFAVRASFGGDSVVTLLDYGAGNVRSVRNAIRYLGFDIKDVQTPEDILNAKRLIFPGVGAFAPAMDVLNSKGMAEALCTYIENDRPFLGICLGLQLLFESSEENGPVKGLGLIPGVVGRFDSSNGFRVPHIGWNALEISEDSEILDEISNRHVYFVHSYRAMPSDKNKDWISSTCSYGDRFIASVRRGNVHAVQFHPEKSGGDLVVTKGDQYDVREQTEENEVRNLGKPVELAGQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFEDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEEYLRTGVKTGKSSLEQISKVYGNQAVVVSIDPRRVYLKSPNDVEFKVIRVTNPGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDTDLVKLISDSVSIPVIASSGAGSPHHFSEVFNKTNASAALAAGIFHRKEVPIQSVKEHLLKEGIEVRI 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24833368 24859625 + Lsi02G018930.1 Lsi02g01893 656635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01893 995 TIGRFAM IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 511 698 IPR010139 GO:0000105|GO:0016763
Lsi02g01893 995 CDD STKc_MAPKKK 2 258 - -
Lsi02g01893 995 SUPERFAMILY Ribulose-phoshate binding barrel 700 994 IPR011060 -
Lsi02g01893 995 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Lsi02g01893 995 SUPERFAMILY Protein kinase-like (PK-like) 3 302 IPR011009 -
Lsi02g01893 995 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 510 711 IPR010139 GO:0000105|GO:0016763
Lsi02g01893 995 SUPERFAMILY Class I glutamine amidotransferase-like 510 699 IPR029062 -
Lsi02g01893 995 Gene3D Transferase(Phosphotransferase) domain 1 2 307 - -
Lsi02g01893 995 ProSiteProfiles Protein kinase domain profile. 3 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01893 995 CDD GATase1_IGP_Synthase 511 698 IPR010139 GO:0000105|GO:0016763
Lsi02g01893 995 SMART serkin_6 3 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01893 995 Pfam Glutamine amidotransferase class-I 513 698 IPR017926 -
Lsi02g01893 995 CDD HisF 700 989 IPR004651 GO:0000105|GO:0000107
Lsi02g01893 995 Pfam Histidine biosynthesis protein 704 977 IPR006062 GO:0000105
Lsi02g01893 995 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE HISHF 522 698 - -
Lsi02g01893 995 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE HISHF 699 995 - -
Lsi02g01893 995 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 510 711 - -
Lsi02g01893 995 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 699 995 - -
Lsi02g01893 995 Gene3D Aldolase class I 706 995 IPR013785 -
Lsi02g01893 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Lsi02g01893 995 Pfam Protein kinase domain 7 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01893 995 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 522 698 - -
Lsi02g01893 995 Gene3D - 508 705 IPR029062 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00445 Lsi-Chr1:3704520 Lsi02g01893 Lsi-Chr2:24833368 4.45E-95 dispersed
Lsi02g01893 Lsi-Chr2:24833368 Lsi11g01440 Lsi-Chr11:22938320 1.20E-100 dispersed
Lsi05g01586 Lsi-Chr5:23617637 Lsi02g01893 Lsi-Chr2:24833368 1.09E-10 dispersed
Lsi02g01893 Lsi-Chr2:24833368 Lsi10g00114 Lsi-Chr10:1804629 5.94E-100 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83414 PF00977 His_biosynth 8.60E-42 CL0036 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01893 K01663 - csv:101205184 999.964