Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01898 ATGGGTCAGATCGTGAAGAGGAAGAAGAAAGGCAGACCATCGAAGGCAGATCTGGCACGGCGGTCCGGTGGAGGACTGACATCGTCGGAATCTGAACCGCGGCGGAGTCTCCGTCGCCGGAATGTGAAGTACAACATCGATTACGACGACTTTCTTGAAGAAGACGATGAGGATGAGGAAGAAGACGAGAGGAGGAGAGAGAAGAAGCTCAAGCTTGTTGTGAAACTGAACCAGGGAAGAGATGGAACGCATCTATCTCCAGTGGACGGACTTTCTAGGTCAGAGGCGCGTGATGCACACGCGCCTGAGTATGGGTCGTCGGCGTCGGAAGGGGAAGAAGATGAACCAGAGAGGAAGCCATTGAAGAAGAGGAGGATTGGTGGTGGTGGTGGTGGTGAAGAAGAGGATGAAGATGATGACTACGACGATCAAATTCGTGGAGATGAAAATGAAGACGATGACATTGATGAGGAAAGGGGAAGGAAGGTGGGCTCAAAAGGGTCCGACTCTGTTCCAGGGACTCCCTCAGATCGATCATCCGGGCTACCGTTACCTGATAAGAAGACATTGGAGTTGATTCTTGACAAACTTCAGAAGAAGGATACTTATGGTGTCTATGCTGAACCAGTTGATCCTGAAGAGCTTCCTGACTATCACGATGTCATCGATAATCCTATGGACTTTGCTACCGTGAGGAATAAGTTGGCCAACGGATCATATTCAACCTTGGAACAGTTTGAGAGTGATGTTTTCCTGATATGCTCAAATGCAATGCAATACAATTCACCCGAAACCATTTACCACAAACAGGCACGTTCCATTCAAGAGCTAGCCAAGAAGAAATTCGAGAGAGTAAGAAATGAAGTTGAACGCTCTGAGAAAGAGTTAAAGTTGGAGCAGAGTATGAAATCCAATTCTTACATCAAGAAGCAACCACCAAAGAAACCCTTCTTCAGGACTTTGCAGGAACCCATTGGATCTGATTTTTCCTCAGGTGCAACACTTGCTGCCACGGGAGATGTACAGAACAGTTCCAATCCAATCCAAGGTGTCAACTATGAGGTACCTAGCAATATTGACGGGCACGTAGAGGGTAGTTCCTCCCTCTTTGATACTACTAATCAGGACAAGGTTGAAGACCTCTTCTCAGGAAAGGGTCTTCTAGGTAAATTGGGGAGAAAGACATCTGTGCTTGATGACAACCGCCGTGCAACTTACAACATTTCTAATTCACCAGCGCCAAGATCAGAGTCAATATTTTCAACCTTCGAGGACGAAATAAGACAGCTTGTTGCGGTGGGGCTTCATGCGGAGTATTCCTATGCTAGGAGTCTGGCTCGATTTGCTGCAACACTCGGTCCTATCGCTTGGAAAGTTGCCTCCCAGAGGATCGAGCAGGCTGTACCTGTTGGATGTAAATTCGGCCGTGGTTGGGTTGGAGAATATGAGCCACTTCCAACTCCTGTATTAATGTTTGAGAACCACAACCAGAAGGAGCCTGGTTTCAATGGTAACTTGCATTCTACCAGCGAATTAAGAAAGGATGGAAAGCCTTCAGATACTCCTTTGCCTAAGAAGGAACATTCTCTTAGTGCACCAAGTACAGAAGTGAATGGTCTCGCTAGAGGATCCACCTTAGATGGGAAATCATCTTTTTTTAGGTCCACCCTAAATCCCGGTCCTTCTCCTCAGCAAAATCTGACCAAGAATTTTACTGAGGTAGAGAAGGTTAAAAAGCAAGTTGAGTTAAATTCCTTGCCCTCACCAAGACAAAATAAAGTTGATCTTGGAGTGGAGAAGCAAGCCAATTCAAATGTGACCACTTCTAGGTCTAGAGATATGACATCGGTAAACTTAAATCTTGTTCAATCTGTGCCTTATAAACTGCCTGGTGTTAATGGCGTTGTAACTGGAGGATTGCCTAATGGAAAATTCCCGAGCAATTGTTTGAATAGTCCACGGGCTGCTTTATCATCTTCTAGCTTGCCTTCTCAAACAGCCCCAGTGGCAACTTCTCATGGACAGGACCTGGGGCCCAGTAAGCCAGTACAATTGATGAGAATGATGTCTGAAAGAGCCCCCAAACAAGAAAACTCATCCAATCAATCTTCATCTGATTCTCCGCCAGCTTTGTCATCAGTTCCTTCTACAATGAGAGACGATTCTAATAATGCTGCAGCAGTAGCTTCTCGTGCATGGATGTCCATTGGGGCCGGAGGGTTTAAACAAGTCAGAGATAATTCCACACCTAAAAGTCAAATCTCTGCAGATTCATTGTACAATCCAGCTCGGGAATTTCATCCGCAAATGACACGAGCATGGGGGGAGTTTCGTGCTGGAGGCAATCAGCTCCAATCTGAGAAGAACAATTTCCCTATGCAGGCATTTGTTTCACAAGCCACTCTTGTACCCAATGAACAACAGCTGCAAAACCGGTCCATTATTTACCCTCAACTAGTCCAGGCTGACATGTCTAAGTTGCAGTTGCAGTCGACTTGGCGAGCTCTCAGCCCACATAACCAGCCAAGGAAGAAACAGGAAATGCTTCCTCCTGACTTGAATATCGGTTTTCAGTCTCCTGGGTCTCCCGTGAAACAATCCTCAAGTGTTTTGGTTGACTCCCAGCAGCCAGACCTAGCCTTGCAACTTTAA 2652 46.27 MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRRRNVKYNIDYDDFLEEDDEDEEEDERRREKKLKLVVKLNQGRDGTHLSPVDGLSRSEARDAHAPEYGSSASEGEEDEPERKPLKKRRIGGGGGGEEEDEDDDYDDQIRGDENEDDDIDEERGRKVGSKGSDSVPGTPSDRSSGLPLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIDNPMDFATVRNKLANGSYSTLEQFESDVFLICSNAMQYNSPETIYHKQARSIQELAKKKFERVRNEVERSEKELKLEQSMKSNSYIKKQPPKKPFFRTLQEPIGSDFSSGATLAATGDVQNSSNPIQGVNYEVPSNIDGHVEGSSSLFDTTNQDKVEDLFSGKGLLGKLGRKTSVLDDNRRATYNISNSPAPRSESIFSTFEDEIRQLVAVGLHAEYSYARSLARFAATLGPIAWKVASQRIEQAVPVGCKFGRGWVGEYEPLPTPVLMFENHNQKEPGFNGNLHSTSELRKDGKPSDTPLPKKEHSLSAPSTEVNGLARGSTLDGKSSFFRSTLNPGPSPQQNLTKNFTEVEKVKKQVELNSLPSPRQNKVDLGVEKQANSNVTTSRSRDMTSVNLNLVQSVPYKLPGVNGVVTGGLPNGKFPSNCLNSPRAALSSSSLPSQTAPVATSHGQDLGPSKPVQLMRMMSERAPKQENSSNQSSSDSPPALSSVPSTMRDDSNNAAAVASRAWMSIGAGGFKQVRDNSTPKSQISADSLYNPAREFHPQMTRAWGEFRAGGNQLQSEKNNFPMQAFVSQATLVPNEQQLQNRSIIYPQLVQADMSKLQLQSTWRALSPHNQPRKKQEMLPPDLNIGFQSPGSPVKQSSSVLVDSQQPDLALQL 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24909436 24915497 + Lsi02G018980.1 Lsi02g01898 656640

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01898 883 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 883 - -
Lsi02g01898 883 MobiDBLite consensus disorder prediction 837 883 - -
Lsi02g01898 883 ProSitePatterns Bromodomain signature. 204 260 IPR018359 -
Lsi02g01898 883 MobiDBLite consensus disorder prediction 32 48 - -
Lsi02g01898 883 MobiDBLite consensus disorder prediction 111 131 - -
Lsi02g01898 883 SMART bromo_6 179 287 IPR001487 GO:0005515
Lsi02g01898 883 MobiDBLite consensus disorder prediction 1 15 - -
Lsi02g01898 883 CDD Bromodomain 186 282 - -
Lsi02g01898 883 MobiDBLite consensus disorder prediction 510 524 - -
Lsi02g01898 883 MobiDBLite consensus disorder prediction 655 673 - -
Lsi02g01898 883 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 883 - -
Lsi02g01898 883 SUPERFAMILY Bromodomain 168 290 IPR036427 GO:0005515
Lsi02g01898 883 Coils Coil 275 302 - -
Lsi02g01898 883 MobiDBLite consensus disorder prediction 693 724 - -
Lsi02g01898 883 MobiDBLite consensus disorder prediction 1 186 - -
Lsi02g01898 883 MobiDBLite consensus disorder prediction 531 549 - -
Lsi02g01898 883 MobiDBLite consensus disorder prediction 859 883 - -
Lsi02g01898 883 PRINTS Bromodomain signature 249 268 IPR001487 GO:0005515
Lsi02g01898 883 PRINTS Bromodomain signature 231 249 IPR001487 GO:0005515
Lsi02g01898 883 PRINTS Bromodomain signature 215 231 IPR001487 GO:0005515
Lsi02g01898 883 ProSiteProfiles Bromodomain profile. 198 268 IPR001487 GO:0005515
Lsi02g01898 883 MobiDBLite consensus disorder prediction 655 726 - -
Lsi02g01898 883 Gene3D - 185 306 IPR036427 GO:0005515
Lsi02g01898 883 MobiDBLite consensus disorder prediction 132 155 - -
Lsi02g01898 883 MobiDBLite consensus disorder prediction 494 549 - -
Lsi02g01898 883 Pfam Bromodomain 192 272 IPR001487 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01898 K22184 BRD9; bromodomain-containing protein 9 - csv:101204699 1525.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01898 Lsi-Chr2:24909436 Lsi04g01811 Lsi-Chr4:25337478 2.14E-68 dispersed
Lsi02g01898 Lsi-Chr2:24909436 Lsi11g01285 Lsi-Chr11:21456314 9.42E-84 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g527 . . . . Bpe09g00169 . . . . . Cma01g01124 . Car01g00998 Car09g00874 Sed04g3216 Cpe06g00774 Cpe02g00777 Bhi09g01656 Tan01g4563 Cmetu01g2650 . Hepe01g1265 Mch11g1197 . . . . . . . . . . Cone14ag1152 Cone15ag1169 Lsi02g01898 Csa07g01101 . . Blo07g00901 . Bda05g00716 Bda12g00914 . Bpe03g00789 . . . Cmo01g01175 Cmo09g00956 . . . . . . . . . . . . . Cla09g01015 Cam09g1072 Cec09g1072 Cco09g1090 . . Cre09g1036 . . . Cme01g01024
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005656 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39