Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01902 ACGTTGAAAGTCTCGACTCGCTTCCCTCCTTCGGAAGGAGATTTCGATACATTGTCTCACCGGAGAACTGCTCTGAGAGGTCTCTGGTTTGATCCTCTGATCGTCAATGGCGGAGGGCAAAACCTCCCGCCGGACGTGACGCAGGTGATTGATCAGTTGGAGCGCCACTGCTTGGCTCCCGATGGATCTCTCGTCTCCAAGCCGGCCCACTACGATCTACAGCTCGCGAGAGAAGAAATGTCGAGGGAAAGATTGCGTTATTTGGAAGCCATGGTACTTGCGATTATTTTGAGTGTTATTGTCGTTGTTTGTTTCTTGCAGGCAATCTATTGTGAAGCAATTGCAATGGTAGAAGAGTACCAACAGGCTGTTTCAATGGCGAACCTTGGAGGAGTTCGAGATGTTCAGGCTCTTTATCCACAATTAGGCTTGAAGAATTCGCCTCAGGTTTATGAGACCCTTGAGCATCGAATGGTTGTGGCAGAAGCATCTCAAAGATTGAGGCTTCCTCTTATATCAAAGGACGGTGAAATCCAGGAGGAAGAGATTGAGAAGTTGAGTGTAGTATCACGAAGTTCCCTTGATAGTACAAGCACCGGTGTCACAATCAGCTCAAGCGCTAATTCAACAAATTATGCAAGTGCTAGCAGTACTGGAAGCATTGTGAACAATAGTCTTTCAGTAAGCTCAACTGATACTGCAGAACCTGGAGTAGGTGGTGTTCCCAATCGCTTTCTTGGAATCACACCTGCCTTTTTATGGCAAACACAGCTCCATCAAACGCCTTCCACGGATATGACCGAATATCAAATGGCTCTTTCCCGCGAAATTGATGCTCGTTTGAAGATTAAATGTGATAAAGTTGCTGATGCTTTTGTGATGGATGATATTGGTAGGTCTATCGTTCCTTACCATTTTGTACAATTCTGCAAGCATGAAATTCATTATATGATGCATATCTTATGGCCTTGCATTCATGCAGAGTCTTCATCTGGGCATCATAGCTCTAGTGCTCGGCTTCCAGAGAGGTCTGGTTGGCTCTTCCGTGGCAGTATTTTTTTTGTTTTGTTTTTGTATACCCCATTAGTTTGTTTTCTCACTAAAACTTCAAACAATAGGGTCAAGTTGATCATTGAGGAAATTGAAAGGGAAGAAGCAGCTTTACGGCAAGAGCTTTATTCAGCAGACAGAAAGTTCGCTGAATATTACAATGTTCTTGAGCAGATATTGGGAGTACTAATTAAGCTTGTCAAAGATTTGAAGCTGCAGCATCAACATAAATATGACGATCTTCAGAAAACATGGCTGTGCAAAAGGTGTGAGACCATGAATGCGAAACTGAGTGTTTTAGAGCACGTTCTCCTGCTAGAGACTTACACTCAAGAATCTATACCAGCCCTTCATAAAATAAGGTATTTGTTGAGTATATTCTTTTCAGCGGATGGCAGGTTATCGTGTTATCATCATGGTAAAAATGATTCGTATGTGCTTTTTTACAGAAAATATCTTGTTGAAGCTACGGAGGAAGCTTCTATTTCTTATAACAAAGCAGTTACACGTCTCCGCGAGTATCAAGGTGTAGACCCTCATTTCGACACAATTGCGAGGCAGTACCATGATATTGTGATGGTAATGATAATGTCTTGTAAAATAGCTATTCAATTTCATCCATCCTCTTTGTTGAAAATGAGGAACAAAAGTAAGCTCATCAGTTTTTTGCCCACTTTTATTTTGCAGAAACTGGAGAATATGCAATGGACAATTCACCAAGTTGAGATGGACCTGAAACGCTTGCCAGATCAGTCAAGTACA 1812 42.27 TLKVSTRFPPSEGDFDTLSHRRTALRGLWFDPLIVNGGGQNLPPDVTQVIDQLERHCLAPDGSLVSKPAHYDLQLAREEMSRERLRYLEAMVLAIILSVIVVVCFLQAIYCEAIAMVEEYQQAVSMANLGGVRDVQALYPQLGLKNSPQVYETLEHRMVVAEASQRLRLPLISKDGEIQEEEIEKLSVVSRSSLDSTSTGVTISSSANSTNYASASSTGSIVNNSLSVSSTDTAEPGVGGVPNRFLGITPAFLWQTQLHQTPSTDMTEYQMALSREIDARLKIKCDKVADAFVMDDIGRSIVPYHFVQFCKHEIHYMMHILWPCIHAESSSGHHSSSARLPERSGWLFRGSIFFVLFLYTPLVCFLTKTSNNRVKLIIEEIEREEAALRQELYSADRKFAEYYNVLEQILGVLIKLVKDLKLQHQHKYDDLQKTWLCKRCETMNAKLSVLEHVLLLETYTQESIPALHKIRYLLSIFFSADGRLSCYHHGKNDSYVLFYRKYLVEATEEASISYNKAVTRLREYQGVDPHFDTIARQYHDIVMVMIMSCKIAIQFHPSSLLKMRNKSKLISFLPTFILQKLENMQWTIHQVEMDLKRLPDQSST 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24946562 24951361 + Lsi02G019020.1 Lsi02g01902 656644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01902 604 PANTHER AUGMIN SUBUNIT 4 FAMILY MEMBER 499 543 IPR029327 GO:0051225|GO:0070652
Lsi02g01902 604 PANTHER BNAA06G02620D PROTEIN 499 543 - -
Lsi02g01902 604 PANTHER BNAA06G02620D PROTEIN 577 596 - -
Lsi02g01902 604 PANTHER AUGMIN SUBUNIT 4 FAMILY MEMBER 35 295 IPR029327 GO:0051225|GO:0070652
Lsi02g01902 604 Coils Coil 371 398 - -
Lsi02g01902 604 Pfam HAUS augmin-like complex subunit 4 234 295 IPR029327 GO:0051225|GO:0070652
Lsi02g01902 604 Pfam HAUS augmin-like complex subunit 4 372 474 IPR029327 GO:0051225|GO:0070652
Lsi02g01902 604 Pfam HAUS augmin-like complex subunit 4 500 542 IPR029327 GO:0051225|GO:0070652
Lsi02g01902 604 PANTHER BNAA06G02620D PROTEIN 372 474 - -
Lsi02g01902 604 PANTHER AUGMIN SUBUNIT 4 FAMILY MEMBER 372 474 IPR029327 GO:0051225|GO:0070652
Lsi02g01902 604 PANTHER AUGMIN SUBUNIT 4 FAMILY MEMBER 577 596 IPR029327 GO:0051225|GO:0070652
Lsi02g01902 604 PANTHER BNAA06G02620D PROTEIN 35 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01902 K16587 HAUS4, AUG4; HAUS augmin-like complex subunit 4 - csv:101203307 705.286
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01902 Lsi-Chr2:24946562 Lsi04g02430 Lsi-Chr4:31377335 5.56E-114 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g516 Blo03g00555 . Bda07g00366 . . . . . . . Cma01g01128 . . . . . Cpe02g00774 Bhi09g01649 . . . . Mch11g1192 . . . . . . . . . . . . Lsi02g01902 Csa07g01095 . . . . . . . . . Bma14g00334 . Cmo01g01179 . . . . Car16g00539 . . . . . . . . . Cla09g01011 Cam09g1068 Cec09g1068 Cco09g1086 . . Cre09g1032 . . . Cme01g01032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006976 1 2 1 1 0 1 2 1 1 1 1 1 1 1 1 2 1 3 1 1 1 1 1 1 1 2 1 2 1 1 36