Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01903 ATGGTTGAATTAGACTACCAGATCCCATCTGCATTTGATCCATTTGCCGACGCCAGGGATTCGGATGCCCCCGGAACAAAAGAGTATGTTCATGTCCGTGTCCAGCAGAGGAATGGCAAGAAGTGCTTGACTACAGTTCAAGGTCTGAAGAAAGAGTTCAGCTACGAGAAGATCCTTAAAGACGTGAAGAAGGAATTCTGCTGTAATGGTAACGTTGTGCAAGACAAAGAATTGGGGAAGATAATTCAACTTCAGGGTGATCAGCGCAAGAACGTGTCTCAGTTTCTTGTTCAGGCTGGTCTTGTCAAGAAGGATCAGATCAAGATCCATGGGTTTTGA 339 45.13 MVELDYQIPSAFDPFADARDSDAPGTKEYVHVRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24954852 24955190 + Lsi02G019030.1 Lsi02g01903 656645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01903 112 CDD eIF1_SUI1 28 111 IPR005874 GO:0003743
Lsi02g01903 112 PANTHER BNAA10G09260D PROTEIN 1 112 - -
Lsi02g01903 112 Gene3D - 2 112 - -
Lsi02g01903 112 PIRSF Transl_init_SUI1_Euk 1 112 IPR005874 GO:0003743
Lsi02g01903 112 ProSiteProfiles Translation initiation factor SUI1 family profile. 30 100 IPR001950 GO:0003743|GO:0006413
Lsi02g01903 112 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 112 - -
Lsi02g01903 112 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 7 112 IPR005874 GO:0003743
Lsi02g01903 112 Pfam Translation initiation factor SUI1 27 100 IPR001950 GO:0003743|GO:0006413
Lsi02g01903 112 SUPERFAMILY eIF1-like 4 112 IPR036877 GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01903 Lsi-Chr2:24954852 Lsi05g00595 Lsi-Chr5:7383441 1.54E-75 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01903 K03113 - csv:101202908 226.098