Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01935 ATGGCGGACGTGATGCTGATGAATGAGATTGAGGAAGCGGCTGGTCGGCTTGGGATAGATCTGTCCCAAGTTGATTTTGACGCTATTCGTCTCCCTCCTGGCGAGGATTTCGGAATCATTAGTGATGATGAAGAGGTTCTACAAGAGGAGAGTCTAGAGTTTGATTCTGGGTTCGGAAACATTATAGTTGTTGACAATCTTCCGGTTGTTCCTCCGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTTCGTAAAATTTTTGGACAGATTGGAGTAATTAAGGATGATGGTCTATGGATGCCTGTTGACCCTACTACGCAGAAAACTTTAGGTTACTGCTTTATTGAGTACGGTACTCCACAGGAGGCTGAGCTCGCCAAAGAGAAGACTGATGGGTACAAGCTGGATAGAGCACATATTTTCACTGTTAACATGTTTGAGGACTTCGACAGATTTATGAAAGTCCCAGATGAGTGGGCCCCTCCTGAAATTAACCCATATACTCCTGGGGAAAATCTTCAACAGTGGCTTACTGATGAAAAAGCACGGGATCAGTTCGTTATCCGTGCTGGTTCTGATACTGAGGTTTTCTGGAATGATGCTAGACATTTGAAGCCCGAGCCTGTCTACAAGCGTCCATTCTGGACCGAGAGTTTTGTGCAGTGGTCCTCATTGGGGACTTACCTAGCCACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGAGCAGGCACCTTTAACCGTCTGATGCGTTTTGCCCATCAACAGGTTAAGTTAATTGATTTTTCTCCTGGTGAGAAATATCTGGTAACTTACAGCAGCCATGAACCCAGCAATCCTCGTGATGCAAATAGGATTGTGATCAATATTTTTGATGTAAGAACTGGGAAAGTAATGAGAGATTTCAAGGGAAGTCCGGATGATTTTACCATTGGAGGAACTGGTGGTGTTGCTGGGGTATCTTGGCCTGTTTTTAGGTGGGGTGGTGGGAAAGATGATAAATACTTTGCCAGGATTGGGAAGAATGTGATTTCAGTCTATGAAACAGAGACTTTCTCCCTTATCGACAAAAAGTCTTTGAAGGTTGAAAATGTTATGGATTTCTGCTGGTCCCCTACAGATCCCATTATTGCACTGTTTGTTCCTGAGCTAGGTGGTGGGAACCAACCGGCTAGGGTGAGTCTTGTCCAAATCCCCAGCAAGGAAGAGTTGAGACAGAAAAATCTTTTCAGTGTTAGCGATTGCAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAGGTTGATAGATATACAAAGACGAAGAAAAGCACGTACACAGGGTTTGAGCTTTTCCGCATAAAAGAGCGGGATATACCTATTGAAGTGCTGGAGCTTGAGAATAAGAACGACAAGATCATTGCCTTTGCCTGGGAGCCAAAGGGGCACAGGTTTGCAGTTATTCATGGTGACAACCCAAGGCCAGATATTAGCTTTTACTCTATGCGAAGCACACACAACAGTGGCCGAGTGTCGAAACTGACAACTCTCAAAGGCAAGCAGGCCAATGCTCTTTTCTGGTCACCTGCTGGACGATTCATTATTCTTGCTGGTCTGAAAGGTTTCAATGGACAATTGGAATTCTACAATGTTGATGAGCTGGAGACGATGGCCACTGCAGAGCATTTCATGGCTACTGATATTGAATGGGATCCTACTGGAAGGTATGTTGCAACTGCTGTAACTTCAGTCCACGAAATGGAAAATGGTTTCAACATATGGTCCTTTAATGGAAAACTCCTCTATCGAATCTTGAAGGATCATTTCTTCCAGTTTGCATGGCGGCCGAGGCCACCATCCTTCTTGAGTCCGGAAAAAGAGGAAGAGATAGCAAAGAATTTGAAAAAGTACAGCAAGAAGTACGAGGCTGAAGATCAGGATGTATCAATGCTACTGAGCGAGCAGGAGCGTGAGAAACGGAAAGCATTGAAGGACGAGTGGGACAAATGGGTGAATGAATGGAAGAGATTGCACGAAGAAGAGAAGTTGTTGCGGCAGAAGCTGCGAGATGGCGAAGCCAGTGACGAAGAAGAGGAATACGAAGCCAAAGAGGTTGAAGTCGAAGAGATTTTGGACGTGTCGGAGGAAGTTTTGTCCTTTGATTTTGGTCAGTAA 2157 44.97 MADVMLMNEIEEAAGRLGIDLSQVDFDAIRLPPGEDFGIISDDEEVLQEESLEFDSGFGNIIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEINPYTPGENLQQWLTDEKARDQFVIRAGSDTEVFWNDARHLKPEPVYKRPFWTESFVQWSSLGTYLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDDFTIGGTGGVAGVSWPVFRWGGGKDDKYFARIGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSTHNSGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQEREKRKALKDEWDKWVNEWKRLHEEEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVSEEVLSFDFGQ 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25267891 25273480 - Lsi02G019350.1 Lsi02g01935 656677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01935 718 CDD RRM_eIF3B 59 143 IPR034363 -
Lsi02g01935 718 PANTHER BNACNNG51870D PROTEIN 6 712 - -
Lsi02g01935 718 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Lsi02g01935 718 Gene3D - 55 154 IPR012677 -
Lsi02g01935 718 SUPERFAMILY RNA-binding domain, RBD 58 141 IPR035979 GO:0003676
Lsi02g01935 718 SMART rrm1_1 61 143 IPR000504 GO:0003723
Lsi02g01935 718 PIRSF Transl_init_eIF3b 7 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lsi02g01935 718 Gene3D - 175 422 IPR015943 GO:0005515
Lsi02g01935 718 Gene3D - 423 622 IPR015943 GO:0005515
Lsi02g01935 718 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Lsi02g01935 718 Coils Coil 687 707 - -
Lsi02g01935 718 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lsi02g01935 718 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Lsi02g01935 718 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 6 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lsi02g01935 718 SUPERFAMILY DPP6 N-terminal domain-like 217 600 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01935 Lsi-Chr2:25267891 Lsi07g00338 Lsi-Chr7:3570241 4.10E-21 dispersed
Lsi02g01931 Lsi-Chr2:25245424 Lsi02g01935 Lsi-Chr2:25267891 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01935 K03253 - csv:101213144 1434.85