Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01944 ATGGATCCAAATCAAACAGTACTGAATCTTTGTGGTGGAGAAAAGGTTTTAAAGATGGATCCTGAAGATAGTTTGTGTAGCTCTGAAGTTTGGACAAAATCTTCATCTTTTCCTAATAATAATGTTCAGCAACCTGCACAAAAATGGGCAGATGCTTCCATTTTAGACTATGCTATGGAACAACCTTATCAAGAATTTGAAGAACGGACTGAATCGAAGGCCCCCCTAAGCTGTAACCCGAATCAACAAATTGAAATCCTAGATAAAGATAGTAATCAGATGAATGCAGCACTTCTAGCCAGTAAAATTCAAGATTGGGATCTGAGAGCAATGCTAAATAATCTTTCTTTCCTTGAGCAGAAGATTCATCAGCTTCAGGAACTCGTGCATCTGATCGTTGGTCGGAGGAGCCAAGTCTTCGGGAGGCCAGATGAACTCGTAGTTCAGCAACAGCAGCTGATAACTGCAGATCTAACTTCAATTATTGTTCAGTTAATCTCGACGGCGGGTAGTCTGCTTCCATCTGCAAAGCATAACTTGTCTGCTGCTGTTCCTCCAGTCGGGCAGCTGGAGCAGCTCGACAGGGTTCTTTTTGCGTCTGGACCCGGGACTAATAATGGTGGTGTTCAGTCACAACAGGGTGATGGAACCAAACTCCCCGAGTTTCCAACCCAAGTGGACGGTAGTAGCAAGTGTTTGAAGGAACAGAACATGACTGTTGAAGAACACGAATCAAAGGATGAAGAAGATGCAGATGAAAATGAGAACCTACCACCTGGTTCGTATGAAATATTGCAGCTAGAAAAAGAAGAGATCCTAGCACCTCACACCCACTTCTGTGCAATATGTGGAAAAGGGTTCAAGAGAGATGCAAATTTACGAATGCACATGAGGGGTCACGGTGACGAGTATAAAACCGCAGCCGCCCTTGCAAAGCCGAACAAAGAACTGGGTTCCGAGACCATGCTAATTAAGAGGTATTCCTGCCCTTTCACCGGCTGCAAGCGGAACAAGGATCATAAGAAGTTCCAGCCTTTGAAAACTATTCTGTGTGTTAAAAACCATTACAAGAGAACTCACTGTGACAAAAGCTTCACTTGTAGCAAATGCAACTCTAAGAAATTCTCAGTAATTGCTGATCTCAAAACACATGAGAAGCATTGTGGGAAAGATAAGTGGCTTTGTTCTTGTGGGACTACTTTCTCCAGGAAAGACAAGCTCTTTGGACACATTGCTCTCTTCCAAGGCCACACTCCTGCAATTCCTCTCGACGAGTCGAAGGGAGCAGTCATGTCCTGTGATCGAGGAGAACGCTATGAAACGATGAATAAGCTTGGGAGCATAAATTTCAGTTTCGGGTCGGTTGCTTCGGGAGGAAGCTCAGTTGAAACCATAGGAGATGCAAAAGGTGGTGTTGATGATCCTCTTAGTTATTTCTCGCCTCTGAACTTCGATTCGTGTAATTTTGGTGGCTTTCACGAGTTTCCTCGACCGCCATTCGAGAACACAGACAATGCATTTTCGTTCCTCATCCCGGCATCTAGCAATTACACCCAAAAATCTGGTGCAGAATCAAGCTCTAATAACCTTGAATGA 1596 43.98 MDPNQTVLNLCGGEKVLKMDPEDSLCSSEVWTKSSSFPNNNVQQPAQKWADASILDYAMEQPYQEFEERTESKAPLSCNPNQQIEILDKDSNQMNAALLASKIQDWDLRAMLNNLSFLEQKIHQLQELVHLIVGRRSQVFGRPDELVVQQQQLITADLTSIIVQLISTAGSLLPSAKHNLSAAVPPVGQLEQLDRVLFASGPGTNNGGVQSQQGDGTKLPEFPTQVDGSSKCLKEQNMTVEEHESKDEEDADENENLPPGSYEILQLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKELGSETMLIKRYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKGAVMSCDRGERYETMNKLGSINFSFGSVASGGSSVETIGDAKGGVDDPLSYFSPLNFDSCNFGGFHEFPRPPFENTDNAFSFLIPASSNYTQKSGAESSSNNLE 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25337855 25340327 + Lsi02G019440.1 Lsi02g01944 656686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01944 531 MobiDBLite consensus disorder prediction 201 259 - -
Lsi02g01944 531 SMART c2h2final6 327 360 IPR013087 -
Lsi02g01944 531 SMART c2h2final6 278 300 IPR013087 -
Lsi02g01944 531 SMART c2h2final6 365 387 IPR013087 -
Lsi02g01944 531 SUPERFAMILY beta-beta-alpha zinc fingers 276 304 IPR036236 -
Lsi02g01944 531 MobiDBLite consensus disorder prediction 203 219 - -
Lsi02g01944 531 Coils Coil 108 128 - -
Lsi02g01944 531 ProSitePatterns Zinc finger C2H2 type domain signature. 280 300 IPR013087 -
Lsi02g01944 531 Gene3D Classic Zinc Finger 262 333 - -
Lsi02g01944 531 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 19 514 - -
Lsi02g01944 531 ProSiteProfiles Zinc finger C2H2 type domain profile. 278 305 IPR013087 -
Lsi02g01944 531 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 19 514 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00775 Lsi-Chr1:6094477 Lsi02g01944 Lsi-Chr2:25337855 1.85E-78 dispersed
Lsi02g01944 Lsi-Chr2:25337855 Lsi03g00054 Lsi-Chr3:850153 1.52E-75 dispersed
Lsi10g01052 Lsi-Chr10:14750518 Lsi02g01944 Lsi-Chr2:25337855 7.36E-19 dispersed
Lsi02g01944 Lsi-Chr2:25337855 Lsi08g01410 Lsi-Chr8:22345397 3.23E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24868 None None None None Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01944 - - csv:101220745 988.793