Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01949 ATGATAAAGCAAGCGCACTCATTGATTCAAATTCTCAACGAAATTCAGTTCATCGGATTCAGAAGCATTAGCGGAGTTAGATTCTGTTCGTCGATCCTTCATTCCTCCGCCTTCCAAACCAAACCGCTGGGGAATCTCACTTCCACACGCTCCCGCAACCACCATCGCCGGCCCCCCATGGCCGCCTCCGCCGCCGCTTCCGCCGCCGCGGATAACCCATCATCCACCTCTTCATCCTCCTCCAACCCTTTCATCTTTTCCCCCGATCCTCCCCCTAGACTCGCTCTCACACCCCATCAGATTAAGCTTTGTTCGGAAGTTCTTGAGGCCTTCAGGGAGAAGCTTCAGATGCCTGATGTCATCAACCAGGAGTTCGCCCGATTGCAGGCCAAGAGAATAACTGTATCTGATATGAGGAGAAGTTGCTCTGTGGCTTTTGACAATGTTAACATAAATAAAAATCGCTACACGGATGTATTACCCTTTGATGAGACTAGAGTTGTACTTGACTCATGTAAGGATTACAGACCTTCTGCAAGGGGTTATATCAATGCAAGCTTTATTTTGACTTCCTCCTCAAAAAGCCTGTCTAAGTTTATTGCCACACAAGGTCCATTACCACACACTTATGAGGATTTCTGGGAGATGATATTTCAGTATAAATGCCCTGCAATCTTGATGCTTACTCGTCTTGTTGATAATTACAAGGGTCAGGCGGGTTGTCCCGTGAGATTAGTCGAGGTGCGTATGGTAAAGTGTGGAGATTATTTTCAGGCAGAAGATGGTCCTAGAGATTTTGGTAATCTAATTGTTGTCTCTAAATGGATAAAATCTTCGAACTCCTCTCTTATACTGCGCCATTTGGAGGTGAACCATAAAGAGTCGGAAGAATCTGTGGCTGTTCTACATATTCAGTACCCAGAATGGCCTGACCATGGAGTTCCTAATGACACACTTGCTGTTCGTGAAATGTTGAAGAGGCTGTATCATTTACCTCCCGATCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGAAGAACTGGAACATATTGTGCAATTCACAACACAATTCAGAGAATCCTTACTGGAGACATGTCTGCTTTAGATCTTGTCAGTACCATTTCTACATTTAGGTCCCAGCGAATTGGAATGGTTCAGACACTGGTAAACTAG 1179 45.46 MIKQAHSLIQILNEIQFIGFRSISGVRFCSSILHSSAFQTKPLGNLTSTRSRNHHRRPPMAASAAASAAADNPSSTSSSSSNPFIFSPDPPPRLALTPHQIKLCSEVLEAFREKLQMPDVINQEFARLQAKRITVSDMRRSCSVAFDNVNINKNRYTDVLPFDETRVVLDSCKDYRPSARGYINASFILTSSSKSLSKFIATQGPLPHTYEDFWEMIFQYKCPAILMLTRLVDNYKGQAGCPVRLVEVRMVKCGDYFQAEDGPRDFGNLIVVSKWIKSSNSSLILRHLEVNHKESEESVAVLHIQYPEWPDHGVPNDTLAVREMLKRLYHLPPDLGPIVVHCSAGIGRTGTYCAIHNTIQRILTGDMSALDLVSTISTFRSQRIGMVQTLVN 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25380140 25386687 - Lsi02G019490.1 Lsi02g01949 656691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01949 392 MobiDBLite consensus disorder prediction 68 84 - -
Lsi02g01949 392 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 64 391 - -
Lsi02g01949 392 Pfam Protein-tyrosine phosphatase 150 390 IPR000242 GO:0004725|GO:0006470
Lsi02g01949 392 PRINTS Protein tyrosine phosphatase signature 199 219 IPR000242 GO:0004725|GO:0006470
Lsi02g01949 392 PRINTS Protein tyrosine phosphatase signature 181 188 IPR000242 GO:0004725|GO:0006470
Lsi02g01949 392 PRINTS Protein tyrosine phosphatase signature 337 355 IPR000242 GO:0004725|GO:0006470
Lsi02g01949 392 PRINTS Protein tyrosine phosphatase signature 299 316 IPR000242 GO:0004725|GO:0006470
Lsi02g01949 392 PRINTS Protein tyrosine phosphatase signature 370 385 IPR000242 GO:0004725|GO:0006470
Lsi02g01949 392 MobiDBLite consensus disorder prediction 43 84 - -
Lsi02g01949 392 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 64 391 - -
Lsi02g01949 392 SMART PTPc_3 120 392 IPR000242 GO:0004725|GO:0006470
Lsi02g01949 392 SMART ptp_7 300 392 IPR003595 -
Lsi02g01949 392 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 105 390 IPR029021 -
Lsi02g01949 392 ProSiteProfiles PTP type protein phosphatase domain profile. 121 392 IPR000242 GO:0004725|GO:0006470
Lsi02g01949 392 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 319 392 IPR000387 GO:0016311|GO:0016791
Lsi02g01949 392 ProSitePatterns Tyrosine specific protein phosphatases active site. 340 350 IPR016130 GO:0016311|GO:0016791
Lsi02g01949 392 Gene3D Protein tyrosine phosphatase superfamily 95 392 IPR029021 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01949 - - bhj:120086129 658.292