Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01976 ATGACAATCCTCGAGGTTGGAGATGGCGTATTCGAGGTGCTTTCTACCTCAGGCGATACACATTTGGGTGGTGATGATTTTGACAAGAGGATTGTCGATTGGCTTGCCGAGAGCTTTAAGAGGGATGAAGGAATCGATCTTCTGAAAGACAAACAAGCGCTGCAACGTCTAACGGAAACTGCTGAGAAGGCAAAGATTGAGCTATCATCTTTAACTCAAACCAATATTAGTTTGCCATTTATTACTGCGACCAGCGACGGTCCGAAACATATTGATACTACACTTACTAGGGTCAAGTTTGAAGAGTTATGTTCAGACTTGCTAGATAGGCTGCGATCACCGGTAGAAACGGCTCTAAAGGATGCAAAGTTGTCGTTCAAAGATATAGATGAAGTCATTCTTGTCGGAGGCTCAACTCGTATCCCAGCAGTTCAGGAGCTTGTCAAGAAAATGACAGGGAAAGAACCAAATATGACTGTAAATCCCGACGAAGTGGTTGCTCTCGGGGCTGCAGTTCAGGCTGGTGTTTTGGCTGGAGATGTCAGTGACATTGTTCTCTTGGATGTCACACCTCTCTCTCTTGGTTTGGAAACTTTAGGTGGAGTGATGACCAAAATCATTCCGAGGAACACGACCTTACCAACATCCAAATCGGAGGTGTTTTCAACAGCAGCAGATGGACAAACAAGTGTTGAGATTAACGTATGTCAAGGCGAACGAGAGTTTGTTCGGGACAATAAGTCTCTAGGACGAATTCTCCTGGACGGTATCCCACCTGCACCTCGCGGTGTTCCTCAGATTGAAGTGAAATTTGACATTGATGCTAATGGTATTCTCTCTGTAACTGCTATTGACAAGGGAACTGGGAAGAAGCAGGACATCACAATCACTGGCGCTAGTACTTTACCAAGTGATGAGGTGGATAGAATGGTTAAAGAAGCAGAGAAGTTTGCAAAGGAAGACAAGGAAAAGAGGGATGCCATAGACACTAAGAATCAAGCAGATTCTGTTGTGTACCAAACTGAAAAACAGCTGAAGGAGCTGGGAGACAAAATTCCCACGTCGGTTCGAGATACCGTTGAGGCTAAGCTCAAAGAACTTAAGGATGCCATCTCTAACGGGTCGATTGAAACTATAAAAAACTCGATGGCTGCACTGAATCAAGAAGTAATGCAGATGGGGCAGTCCCTCTACAGCCAGGCAACAGCCTCAAGCGACGGGACTGCGTCGAGAACTCAGTCTACTTCATCAGGATCAGCTGGAGAAACTGATGGGGATGTTGTTGATGCAGATTTTGTGGATACAATTGGTAACTTGTATAGAAAGCAGGCGCGATCGCCTCTTCTCCTTCATCGTTCTTACCTTTGCCTTGTTCATCTTCTTCTCCGACGAACACACAATTCGCTCCGGCGTCTCCTCCTTGCGCGCGAGCGTTTTGCAGACGGAGACCAGACCACGTCAGCTTCTGTAGTCGAAGACCAATCAAGGGCCTCCGGCGACCTGGTAGTATCTGCTTCTAGTGTCTGCTTCGTATCCTTAAAGATGCTTCCTCTTTCGCTCCTAAAGACTGCTCAAGGGCACCCAATGTTGGTGGAGTTGAAAAATGGTGAGACTTACAATGGCCATTTGGTTAATTGTGATACATGGATGAACATTCATCTTCGGGAAGTCATCTGCACTTCAAAAGATGGTGACCGGTTTTGGCGAATGCCTGAATGTTATATCCGTGGTAATACAATCAAGTATTTGCGGGTTCCAGATGAGGTTATTGATAAAGTTCAGGAAGAAGCCAAAAGCCGTGCAGATAGGAAACCTCCAGTGTTGGGGCGTGGAAGAGGAAGAGGGCGTGAGGATGGTCCTGGTGGAAGACCAGCTAAAGGAATGGCCCGAGGCTTTGATGATGGTGCTAAAGCTGCTTCTGGAGGCCGTGGAAAAGGTGGCCCTGGTGGAAAACCTGGTGCCAACAGA 1968 46.7 MTILEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAESFKRDEGIDLLKDKQALQRLTETAEKAKIELSSLTQTNISLPFITATSDGPKHIDTTLTRVKFEELCSDLLDRLRSPVETALKDAKLSFKDIDEVILVGGSTRIPAVQELVKKMTGKEPNMTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVCQGEREFVRDNKSLGRILLDGIPPAPRGVPQIEVKFDIDANGILSVTAIDKGTGKKQDITITGASTLPSDEVDRMVKEAEKFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKIPTSVRDTVEAKLKELKDAISNGSIETIKNSMAALNQEVMQMGQSLYSQATASSDGTASRTQSTSSGSAGETDGDVVDADFVDTIGNLYRKQARSPLLLHRSYLCLVHLLLRRTHNSLRRLLLARERFADGDQTTSASVVEDQSRASGDLVVSASSVCFVSLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEEAKSRADRKPPVLGRGRGRGREDGPGGRPAKGMARGFDDGAKAASGGRGKGGPGGKPGANR 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25637387 25644333 - Lsi02G019760.1 Lsi02g01976 656718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01976 656 MobiDBLite consensus disorder prediction 398 424 - -
Lsi02g01976 656 Gene3D - 302 402 IPR029048 -
Lsi02g01976 656 PANTHER HEAT SHOCK PROTEIN 70KDA 2 412 IPR013126 GO:0005524|GO:0140662
Lsi02g01976 656 CDD LSm4 516 591 IPR034101 GO:0000398|GO:0000956
Lsi02g01976 656 Gene3D - 2 161 - -
Lsi02g01976 656 MobiDBLite consensus disorder prediction 595 623 - -
Lsi02g01976 656 Pfam Hsp70 protein 2 398 IPR013126 GO:0005524|GO:0140662
Lsi02g01976 656 PRINTS 70kDa heat shock protein signature 264 280 - -
Lsi02g01976 656 PRINTS 70kDa heat shock protein signature 160 180 - -
Lsi02g01976 656 PRINTS 70kDa heat shock protein signature 129 145 - -
Lsi02g01976 656 PRINTS 70kDa heat shock protein signature 183 202 - -
Lsi02g01976 656 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 175 300 IPR029047 -
Lsi02g01976 656 SUPERFAMILY Actin-like ATPase domain 2 177 IPR043129 -
Lsi02g01976 656 MobiDBLite consensus disorder prediction 398 422 - -
Lsi02g01976 656 SUPERFAMILY Sm-like ribonucleoproteins 517 627 IPR010920 -
Lsi02g01976 656 Pfam LSM domain 520 584 IPR001163 -
Lsi02g01976 656 PANTHER 70 KDA HEAT SHOCK PROTEIN 2 412 - -
Lsi02g01976 656 Coils Coil 47 74 - -
Lsi02g01976 656 Gene3D - 162 174 - -
Lsi02g01976 656 Gene3D - 515 597 - -
Lsi02g01976 656 Gene3D Actin; Chain A, domain 4 24 111 - -
Lsi02g01976 656 MobiDBLite consensus disorder prediction 595 656 - -
Lsi02g01976 656 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 179 335 IPR029047 -
Lsi02g01976 656 SMART Sm3 519 585 IPR001163 -
Lsi02g01976 656 ProSitePatterns Heat shock hsp70 proteins family signature 3. 132 146 IPR018181 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01976 Lsi-Chr2:25637387 Lsi09g01011 Lsi-Chr9:13848300 0 dispersed
Lsi02g01976 Lsi-Chr2:25637387 Lsi01g01415 Lsi-Chr1:12295409 1.83E-105 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01976 K03283 - csv:101212307 789.645