Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02011 ATGTCGTTAGTTAGGCCATCCGATCCACCTCCATTATCATATGGAAGTCGCAAGCTTTACTCGTTGAAGGGAACTAATAATGCTCCTGACTTGTCCACGCAAAGATTTGGCTCTGAAAAACATAGAACGATGTATATGAATGATACATATTGCAGTGAGAGTTATGAGAAGTATTTCCTCGACTTCCCGATAGAAGAGCTATCGATTTCTGGCATTTCTACCAATTCTTGTCACCCCAACGCTTGGGTTGATTCTCTATCCCCCTTGTGTGATTCATTTACACTTTTTGATGCTCGTCAATCAAATTCAGACTCGGCTTGCCTCGAGAGTACAAGTCCAGACCAGCTTGATTTTGAGGATGATCAAGTGAGACTGAAGTTGCAAGAATTGGAGAGAGATCTGCTGGGTGACCCAGATGCTGCAGATTACGATGTTGAGATGCTTGCAAATGGCCAGAGCATGGAAATTGATAGCGAATGGGCAAATTCGATTCAAGATGCACTACTTCATGACTCGCCAAAGGAATCTTCGTCGACAGATTCTAATTTCAGTACCATCAGCAGCATTAAGGATGCATCTCAGATATCTTCACAGAATCCCAGACAAATGCTTTTAGAATGTGCTTTTGCTATCTCAGAAGAGAATTTTGAAGAAGCGTCAACCATGATAGAACAGCTCCGAGGTATGGTCTCGGTTCAGGGAGATCCCTCACAGAGGATTGCTGCGTATATGGTGGAAGGTCTTGCGGCTCGGTTGTTGGAATCAGGAAAATGTCTTTATAAAGCTTTGAGATGCAAAGAACCCCCTTCCTCCGACCGTCTCGCAGCTATGCAGATCCTTTTCGAGGTCTGCCCCTGTTTCAAATTTGGCTTTATGGCTGCAAATTATGCCATTATTGAGGCAGCGAAAGATGAGAAGAGAATTCACATAATTGATTTCGATGTAAGCCAAGGAACTCAGTACATAAAATTGATTCAGATGCTAGCAGCTCAGCCAGGTAAGCCACCACACTTGAGGTTAACAGGTGTTGATGACCCCGAATCAGTACAGCGCCCCGTTGGAGGTCTTAGACTCATTGGACAAAGACTCGAGCAACTGGCAAAAGCACTGCGGGTTCCATTTGAATTTCGAGCCATTCCCTCAAATGCTTCTGATGTTACTCCCTCAATGCTCGCCTCCCGGCCTGGAGAAGCACTCATAGTGAACTTTGCTTTTCTGCTTCACCACATGCCAGATGAAAGCGTTTCAACCGTAAATCTACGAGACAGGCTTCTCCGAATGGTTAAGAGCTTGAACCCGAAACTAGTAACAGTCGTCGAACAGGACATGAACACAAACACCACCCCATTCTTTTCAAGATTCGTCGAAGCCTATAACTACTACGCAGCTGTTTATGATTCTCTTGATGCAACACTCCCAAGAGATAGTCAAGACAGAATAAATGTAGAAAGGCAATGCTTGGCAAAGGACATAGTCAACATTGTAGCTTGTGAAGGTGAGGAAAGAGTAGAGAGATACGAAGTCGCTGGGAAATGGCGGGCAAGAATGACAATGGCGGGTTTCACTTCTTGTTCGATAAGCCAAAACGTGACCGACCCAATTCGCAAACTTATCGAGGAGTATTGCGACAGATTCAAGATGTATGAGGAAATGGGGACACTTCATTTTGGATGGGAAGAGAAAAGCTTGATTGTTACTTCAGCATGGAGGTAA 1713 44.42 MSLVRPSDPPPLSYGSRKLYSLKGTNNAPDLSTQRFGSEKHRTMYMNDTYCSESYEKYFLDFPIEELSISGISTNSCHPNAWVDSLSPLCDSFTLFDARQSNSDSACLESTSPDQLDFEDDQVRLKLQELERDLLGDPDAADYDVEMLANGQSMEIDSEWANSIQDALLHDSPKESSSTDSNFSTISSIKDASQISSQNPRQMLLECAFAISEENFEEASTMIEQLRGMVSVQGDPSQRIAAYMVEGLAARLLESGKCLYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFMAANYAIIEAAKDEKRIHIIDFDVSQGTQYIKLIQMLAAQPGKPPHLRLTGVDDPESVQRPVGGLRLIGQRLEQLAKALRVPFEFRAIPSNASDVTPSMLASRPGEALIVNFAFLLHHMPDESVSTVNLRDRLLRMVKSLNPKLVTVVEQDMNTNTTPFFSRFVEAYNYYAAVYDSLDATLPRDSQDRINVERQCLAKDIVNIVACEGEERVERYEVAGKWRARMTMAGFTSCSISQNVTDPIRKLIEEYCDRFKMYEEMGTLHFGWEEKSLIVTSAWR 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26071675 26073387 - Lsi02G020110.1 Lsi02g02011 656753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02011 570 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 12 569 IPR005202 -
Lsi02g02011 570 ProSiteProfiles GRAS family profile. 191 570 IPR005202 -
Lsi02g02011 570 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 12 569 IPR030011 GO:0003700|GO:0005634
Lsi02g02011 570 Pfam GRAS domain family 201 570 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02011 Lsi-Chr2:26071675 Lsi05g00522 Lsi-Chr5:6546210 1.42E-146 dispersed
Lsi11g01489 Lsi-Chr11:23385384 Lsi02g02011 Lsi-Chr2:26071675 1.85E-43 dispersed
Lsi02g02011 Lsi-Chr2:26071675 Lsi10g00057 Lsi-Chr10:977937 2.33E-153 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24870 PF03514 GRAS 2.10E-131 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02011 - - csv:101206511 1074.69