Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02020 ATGGGTCGAAAGAAGCCTACTGCAAGGGATGATGACAGCGCCCCTGCGGCAGCCCATGGTGGTGGGAAGTCAAAGAAAAAGACATTTTCTGTAGACGACGATGAGTACTCCATTGGAACCGAGTTGTCTGAAGAAGCCCAAGTTGAGGAGGAGAAGGTCGTGATAACTGGGAAGAAGAAGGGTAAGAAGGGCAATTCAAAAGCTTCACAAATTAAAGAGAATGATGATGATGATGATGATGTGGATGGTGTTTCAGAAATTGTTATTACCGGGAAGAAGAAGGGCAAGTCGAAGAAAGGTGGAAGTAGCAGTGCTTTTACTGCTTCCAGTTTTGGTTTGCTTGAAGAGGAGGGAATGGATGGTGCCGATGATGACGATGATTCTGTGTTGACTGCAGAAAAGGATGATGATGAAGAGGAAGATTCTGCGATCAAGTTTTCAGGTAAGAAGAAGTCGTCCAAGTCTTCGAAGAAGAGTGGTTTTTCTGCAGTGTCAGCGTTCACTGCCCTTGATGATGAGAATGACGAGGATGTAATTGAGAATGAGATCAGGGTTGATGAAGATATTGATGATGAGCCTGTTATTGCATTTACTGGTAAGAAGAAGTCGTCAAAAGGTGGCAAGAAGGCCGGGAGTGCATTTACAGGTTTTAGTGGTCTTGACTATGAGGACGAGGACAGAGATGATGATAAGGATGGGGATGAAGATGTTACATCAATTAGCTTCTCTGGTAAGAAAAAGAAATCAGCTAAGACTTCAAAGAAGAGTGGAAATTTGTTTACTGCAGCATTAGCAGATGAGGAAAATGATGACGATGTTTCTATTTCAGAGCCAAATAAATTAGACAATGATGGTGTTAATGAAGACGATGTCAATGTTATTGCATTTTCTGGTAAGAAAAAGTCCTCTAAGAAGAAAAGCACCAGTACTTTTACTGCAATAAGGGATGAAAATGCGCAGGGCAATGAAGTTAAAGATGTAGTTGTACCTGAAATACTTAATACAGTAAGTAGTAATCTTGATTCTGATTTATCTAATGCTAACAAGACGGAAGGGGTGGCAGAAACTTCAAAAAGTAAAAAGAAAAAGAAGAAGAGTGGAAGGACTGCTCAAGAAGAAGATGATTTGGATAAGATTCTTGCTGAGCTAGGAGAAGGGCCTACCGTATCAAAACCAGCAGACCCTCCTCTTTCTTCCCAGGAGGCCCAAGTTGAGAATCCACCCGAGCTTGTAGCTCCTCCTGAAAAGGAAGCTGAAGAAGAGAGCACAGAATCGGCTGCAGCAAGGAAGAAGAAAAAGAAGAAGGAGAAGGAAAAAGAAAAGAAGGCGGCTGCTGCTGCAGCAGCTGCTGAAGGGAATGATGAAAAAATTGAGGAGGTAAAGACTGAAATTATAGAACCCAAAAAAGGTGCTGCAAAGAGTAAAGTGCCAGAGAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAGGAAGCAATGGCTAGAAGAAAAGAAGAAGAAGAGCGAAGGAAAAGGGAGGAGGAAGAGAGATTGAGAAAGGAAGAAGAAGAGAGACGTAGGCTAGAAGAACTTGAAAGGCAAGCTGAGGAGGCTAAGCGTAGGAAAAAGGAAAGAGAAAAAGAGAAGCTTTTAAGGAAAAAACTGGAAGGCAAGCTGTTAACAGGTAAACAAAAGGAAGAACAACGGAGGTTGGAGGCAATGAGGAACCAGATATTATCAAGTGCGGGAGGTTTACCTCTGTCTACATCTGACCCTAGTGCACCAGCTAAACGACCAAAATACCAGACCAAGAAGACAAAACCAGCCCATCATCAAACAAATGGCAATGCACAAACAAAGGCAGTGGAACATATAGAAGAAAAAATACAAGAAAAAGATGTGGCAGAGACAGAAATATTGGAGTCAGAGAAGATTGAAGCTGTTGAGTTGATGCATGTGGAGGAAAAATCAGATGTTATTGAGGCTACAGAAGATAATGAAATTCAAGAAGACGAGGATGAGGATGAATGGGATGCAAAGAGTTGGGATGATGCTGTTGTTGATCTTTCCTTAAAAAGTTCCTTTGCTGACGAGGAGCTTGAATCAGAACCTGAGAATGGCATGAAAAAAGATACAAAGAATGGTGCAGGTGCCAAGCTAGCTGCCCCTGCTCAAAAAGGCTTACCTTCTCAGCCTATAAAGTCTCAAGATATTGAAAACAAAAAGAAGCAGCATGAGGTTGAGGTTGCCGACAAGGGCAAAAGAAAAGATGATGCTGTTAAGAAAAAAGCTTCAATTCCAGATGCTACTCCTGTACCACAGGAAGAAAATCTTCGCTCACCCATCTGTTGTATTATGGGTCATGTTGATACCGGTAAAACCAAGCTACTGGACTGTATCCGTGGTACAAATGTTCAAGAGGGAGAGGCGGGAGGAATTACTCAGCAAATTGGGGCAACATATTTTCCTGCCGAGAACATTCGGGAAAGAACTAGGGAATTGAAAGCTGATGCAAAGCTGAAGGTTCCTGGCCTACTTATTATTGATACCCCTGGGCACGAGTCGTTTACAAACTTACGTTCTCGTGGTTCGGGCTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCTTAGAGCCACAAACAATAGAATCTCTTAATCTCTTGAGGATGAGAAACACAGAATTTATTGTTGCTTTGAATAAGGTTGACAGACTTTATGGGTGGAAGACAATCCGCAATGCACCAATTCTCAAGACAATGAAGCAGCAAACCAAGGATGTGCAGAATGAGTTCAATATGAGGCTTATTCAGTGGGCCCAGAAAACTATGACGAAGAAACTTACATATAGTGATGAAGTGCAGTGTACGGTCTTGGAGGTCAAGGTTGTTGAAGGCCATGGAACAACTATTGATGTCATATTGGTTAATGGTGTGCTGCATGAAGGAGATCAAATCGTTGGCCCAATTGTTACTACTATTCGAGCCCTATTGACGCCCCATCCAATGAAGGAACTTCGGGTGAAGGTAGGAAAACAATATAATTCAAATGTAGGAAAACAAGTTTATAACCCTTTTGAGATCAATTTGTTCACTACTGTAGAACCTGGAAAAAGGAACGTTTCAGAGTCTGGTTTTAGTATCTTGAATTTTATTGTCCTGGATATTTCGGTGCACTGTCACTTGAATGACCGAGTGTTTTTGTGGCCTGGAACATATCTGCATCATAAGGAAATCAAGGCTGCTCAGGGAATAAAAATAACTGGACAGGTGATTGGTCCTGAGGATGACTTGGAAGACATCAAGGATTCAGCTATGGAAGATATGAAGTCAGTCTTGAGCAGGATAGACAAGACTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTCGGTTCCTTGGAAGCATTATTGGAGTTTTTGAAGTCCCCGGCAGTGAGCATTCCTGTTAGTGGAATAAGTATAGGACCCGTTCATAAAAAAGACGTCATGAAAGCTAGTGTAATGCTTGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTGACTCCAGAAGCTCGAGAACTTGCTGATGAGCTTGGTGTGAAGATTTTTATTGCTGATATCATATATCACTTGTTCGACCAATTCAAGGCCTATATTGATAATCTTAAGGAGGAAAAGAAGAAAGAAGCCGCTGAGGAAGCAGTCTTTCCTTGTGTTCTCAAAATTCTACCAAATTGCATTTTCAATAAGAAGGATCCCATTGTGTTGGGGGTCGATGTGATTGAAGGCATTGCCAAGGTTGGCACACCAATTTGTATTCCTCAAAGAGAATTTATTGACATTGGTCGCATAGCATCTATTGAAAATAACCACAAACCTGTTGATTATGCAAAGAAAGGGCAGAAGATTGCCATTAAGATAGTTGGGCACTCTTCGGAGGAGCAGCAAAAGATGTATGGTAGGCACTTTGATTTGGAGGATGAACTTGTCAGCCATATATCAAGGAAGTCCATTGACCTTCTCAAAGCCAATTATCGGGATGATTTGTCCACGGATGAGTGGAGACTTGTGGTGAAATTGAAGAATCTTTTCAAGATACAATGA 4080 41.64 MGRKKPTARDDDSAPAAAHGGGKSKKKTFSVDDDEYSIGTELSEEAQVEEEKVVITGKKKGKKGNSKASQIKENDDDDDDVDGVSEIVITGKKKGKSKKGGSSSAFTASSFGLLEEEGMDGADDDDDSVLTAEKDDDEEEDSAIKFSGKKKSSKSSKKSGFSAVSAFTALDDENDEDVIENEIRVDEDIDDEPVIAFTGKKKSSKGGKKAGSAFTGFSGLDYEDEDRDDDKDGDEDVTSISFSGKKKKSAKTSKKSGNLFTAALADEENDDDVSISEPNKLDNDGVNEDDVNVIAFSGKKKSSKKKSTSTFTAIRDENAQGNEVKDVVVPEILNTVSSNLDSDLSNANKTEGVAETSKSKKKKKKSGRTAQEEDDLDKILAELGEGPTVSKPADPPLSSQEAQVENPPELVAPPEKEAEEESTESAAARKKKKKKEKEKEKKAAAAAAAAEGNDEKIEEVKTEIIEPKKGAAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERLRKEEEERRRLEELERQAEEAKRRKKEREKEKLLRKKLEGKLLTGKQKEEQRRLEAMRNQILSSAGGLPLSTSDPSAPAKRPKYQTKKTKPAHHQTNGNAQTKAVEHIEEKIQEKDVAETEILESEKIEAVELMHVEEKSDVIEATEDNEIQEDEDEDEWDAKSWDDAVVDLSLKSSFADEELESEPENGMKKDTKNGAGAKLAAPAQKGLPSQPIKSQDIENKKKQHEVEVADKGKRKDDAVKKKASIPDATPVPQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKTIRNAPILKTMKQQTKDVQNEFNMRLIQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVGPIVTTIRALLTPHPMKELRVKVGKQYNSNVGKQVYNPFEINLFTTVEPGKRNVSESGFSILNFIVLDISVHCHLNDRVFLWPGTYLHHKEIKAAQGIKITGQVIGPEDDLEDIKDSAMEDMKSVLSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIEGIAKVGTPICIPQREFIDIGRIASIENNHKPVDYAKKGQKIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSTDEWRLVVKLKNLFKIQ 1359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26210804 26221605 - Lsi02G020200.1 Lsi02g02020 656762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02020 1359 Pfam Elongation factor Tu GTP binding domain 774 953 IPR000795 GO:0003924|GO:0005525
Lsi02g02020 1359 PRINTS GTP-binding elongation factor signature 774 787 IPR000795 GO:0003924|GO:0005525
Lsi02g02020 1359 PRINTS GTP-binding elongation factor signature 854 865 IPR000795 GO:0003924|GO:0005525
Lsi02g02020 1359 PRINTS GTP-binding elongation factor signature 838 848 IPR000795 GO:0003924|GO:0005525
Lsi02g02020 1359 PRINTS GTP-binding elongation factor signature 890 899 IPR000795 GO:0003924|GO:0005525
Lsi02g02020 1359 MobiDBLite consensus disorder prediction 337 353 - -
Lsi02g02020 1359 MobiDBLite consensus disorder prediction 452 565 - -
Lsi02g02020 1359 MobiDBLite consensus disorder prediction 1 289 - -
Lsi02g02020 1359 CDD IF2_aeIF5B_IV 1230 1325 - -
Lsi02g02020 1359 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 930 1003 IPR015760 -
Lsi02g02020 1359 MobiDBLite consensus disorder prediction 685 756 - -
Lsi02g02020 1359 MobiDBLite consensus disorder prediction 656 672 - -
Lsi02g02020 1359 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1061 1359 IPR015760 -
Lsi02g02020 1359 Gene3D Translation factors 1222 1359 - -
Lsi02g02020 1359 SUPERFAMILY Translation proteins 1226 1358 IPR009000 -
Lsi02g02020 1359 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1092 1221 IPR036925 -
Lsi02g02020 1359 MobiDBLite consensus disorder prediction 117 140 - -
Lsi02g02020 1359 PANTHER PHOTOSYSTEM II PROTEIN D1 930 1003 - -
Lsi02g02020 1359 MobiDBLite consensus disorder prediction 170 189 - -
Lsi02g02020 1359 Coils Coil 418 447 - -
Lsi02g02020 1359 Gene3D - 1109 1215 IPR036925 -
Lsi02g02020 1359 Gene3D Translation factors 950 1015 - -
Lsi02g02020 1359 TIGRFAM small_GTP: small GTP-binding protein domain 775 901 IPR005225 GO:0005525
Lsi02g02020 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 770 1003 IPR027417 -
Lsi02g02020 1359 Coils Coil 1204 1224 - -
Lsi02g02020 1359 Gene3D - 770 949 IPR027417 -
Lsi02g02020 1359 MobiDBLite consensus disorder prediction 686 704 - -
Lsi02g02020 1359 MobiDBLite consensus disorder prediction 728 756 - -
Lsi02g02020 1359 MobiDBLite consensus disorder prediction 647 672 - -
Lsi02g02020 1359 PANTHER PHOTOSYSTEM II PROTEIN D1 1061 1359 - -
Lsi02g02020 1359 PANTHER PHOTOSYSTEM II PROTEIN D1 1 932 - -
Lsi02g02020 1359 MobiDBLite consensus disorder prediction 366 381 - -
Lsi02g02020 1359 Coils Coil 481 545 - -
Lsi02g02020 1359 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 770 1012 IPR000795 GO:0003924|GO:0005525
Lsi02g02020 1359 Pfam Translation-initiation factor 2 1096 1208 IPR023115 -
Lsi02g02020 1359 MobiDBLite consensus disorder prediction 337 612 - -
Lsi02g02020 1359 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 932 IPR015760 -
Lsi02g02020 1359 MobiDBLite consensus disorder prediction 412 431 - -
Lsi02g02020 1359 CDD IF2_eIF5B 773 920 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02020 Lsi-Chr2:26210804 Lsi04g01862 Lsi-Chr4:25759528 5.11E-23 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02020 K03243 - csv:101204360 1305.04