Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g02020 | ATGGGTCGAAAGAAGCCTACTGCAAGGGATGATGACAGCGCCCCTGCGGCAGCCCATGGTGGTGGGAAGTCAAAGAAAAAGACATTTTCTGTAGACGACGATGAGTACTCCATTGGAACCGAGTTGTCTGAAGAAGCCCAAGTTGAGGAGGAGAAGGTCGTGATAACTGGGAAGAAGAAGGGTAAGAAGGGCAATTCAAAAGCTTCACAAATTAAAGAGAATGATGATGATGATGATGATGTGGATGGTGTTTCAGAAATTGTTATTACCGGGAAGAAGAAGGGCAAGTCGAAGAAAGGTGGAAGTAGCAGTGCTTTTACTGCTTCCAGTTTTGGTTTGCTTGAAGAGGAGGGAATGGATGGTGCCGATGATGACGATGATTCTGTGTTGACTGCAGAAAAGGATGATGATGAAGAGGAAGATTCTGCGATCAAGTTTTCAGGTAAGAAGAAGTCGTCCAAGTCTTCGAAGAAGAGTGGTTTTTCTGCAGTGTCAGCGTTCACTGCCCTTGATGATGAGAATGACGAGGATGTAATTGAGAATGAGATCAGGGTTGATGAAGATATTGATGATGAGCCTGTTATTGCATTTACTGGTAAGAAGAAGTCGTCAAAAGGTGGCAAGAAGGCCGGGAGTGCATTTACAGGTTTTAGTGGTCTTGACTATGAGGACGAGGACAGAGATGATGATAAGGATGGGGATGAAGATGTTACATCAATTAGCTTCTCTGGTAAGAAAAAGAAATCAGCTAAGACTTCAAAGAAGAGTGGAAATTTGTTTACTGCAGCATTAGCAGATGAGGAAAATGATGACGATGTTTCTATTTCAGAGCCAAATAAATTAGACAATGATGGTGTTAATGAAGACGATGTCAATGTTATTGCATTTTCTGGTAAGAAAAAGTCCTCTAAGAAGAAAAGCACCAGTACTTTTACTGCAATAAGGGATGAAAATGCGCAGGGCAATGAAGTTAAAGATGTAGTTGTACCTGAAATACTTAATACAGTAAGTAGTAATCTTGATTCTGATTTATCTAATGCTAACAAGACGGAAGGGGTGGCAGAAACTTCAAAAAGTAAAAAGAAAAAGAAGAAGAGTGGAAGGACTGCTCAAGAAGAAGATGATTTGGATAAGATTCTTGCTGAGCTAGGAGAAGGGCCTACCGTATCAAAACCAGCAGACCCTCCTCTTTCTTCCCAGGAGGCCCAAGTTGAGAATCCACCCGAGCTTGTAGCTCCTCCTGAAAAGGAAGCTGAAGAAGAGAGCACAGAATCGGCTGCAGCAAGGAAGAAGAAAAAGAAGAAGGAGAAGGAAAAAGAAAAGAAGGCGGCTGCTGCTGCAGCAGCTGCTGAAGGGAATGATGAAAAAATTGAGGAGGTAAAGACTGAAATTATAGAACCCAAAAAAGGTGCTGCAAAGAGTAAAGTGCCAGAGAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAGGAAGCAATGGCTAGAAGAAAAGAAGAAGAAGAGCGAAGGAAAAGGGAGGAGGAAGAGAGATTGAGAAAGGAAGAAGAAGAGAGACGTAGGCTAGAAGAACTTGAAAGGCAAGCTGAGGAGGCTAAGCGTAGGAAAAAGGAAAGAGAAAAAGAGAAGCTTTTAAGGAAAAAACTGGAAGGCAAGCTGTTAACAGGTAAACAAAAGGAAGAACAACGGAGGTTGGAGGCAATGAGGAACCAGATATTATCAAGTGCGGGAGGTTTACCTCTGTCTACATCTGACCCTAGTGCACCAGCTAAACGACCAAAATACCAGACCAAGAAGACAAAACCAGCCCATCATCAAACAAATGGCAATGCACAAACAAAGGCAGTGGAACATATAGAAGAAAAAATACAAGAAAAAGATGTGGCAGAGACAGAAATATTGGAGTCAGAGAAGATTGAAGCTGTTGAGTTGATGCATGTGGAGGAAAAATCAGATGTTATTGAGGCTACAGAAGATAATGAAATTCAAGAAGACGAGGATGAGGATGAATGGGATGCAAAGAGTTGGGATGATGCTGTTGTTGATCTTTCCTTAAAAAGTTCCTTTGCTGACGAGGAGCTTGAATCAGAACCTGAGAATGGCATGAAAAAAGATACAAAGAATGGTGCAGGTGCCAAGCTAGCTGCCCCTGCTCAAAAAGGCTTACCTTCTCAGCCTATAAAGTCTCAAGATATTGAAAACAAAAAGAAGCAGCATGAGGTTGAGGTTGCCGACAAGGGCAAAAGAAAAGATGATGCTGTTAAGAAAAAAGCTTCAATTCCAGATGCTACTCCTGTACCACAGGAAGAAAATCTTCGCTCACCCATCTGTTGTATTATGGGTCATGTTGATACCGGTAAAACCAAGCTACTGGACTGTATCCGTGGTACAAATGTTCAAGAGGGAGAGGCGGGAGGAATTACTCAGCAAATTGGGGCAACATATTTTCCTGCCGAGAACATTCGGGAAAGAACTAGGGAATTGAAAGCTGATGCAAAGCTGAAGGTTCCTGGCCTACTTATTATTGATACCCCTGGGCACGAGTCGTTTACAAACTTACGTTCTCGTGGTTCGGGCTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCTTAGAGCCACAAACAATAGAATCTCTTAATCTCTTGAGGATGAGAAACACAGAATTTATTGTTGCTTTGAATAAGGTTGACAGACTTTATGGGTGGAAGACAATCCGCAATGCACCAATTCTCAAGACAATGAAGCAGCAAACCAAGGATGTGCAGAATGAGTTCAATATGAGGCTTATTCAGTGGGCCCAGAAAACTATGACGAAGAAACTTACATATAGTGATGAAGTGCAGTGTACGGTCTTGGAGGTCAAGGTTGTTGAAGGCCATGGAACAACTATTGATGTCATATTGGTTAATGGTGTGCTGCATGAAGGAGATCAAATCGTTGGCCCAATTGTTACTACTATTCGAGCCCTATTGACGCCCCATCCAATGAAGGAACTTCGGGTGAAGGTAGGAAAACAATATAATTCAAATGTAGGAAAACAAGTTTATAACCCTTTTGAGATCAATTTGTTCACTACTGTAGAACCTGGAAAAAGGAACGTTTCAGAGTCTGGTTTTAGTATCTTGAATTTTATTGTCCTGGATATTTCGGTGCACTGTCACTTGAATGACCGAGTGTTTTTGTGGCCTGGAACATATCTGCATCATAAGGAAATCAAGGCTGCTCAGGGAATAAAAATAACTGGACAGGTGATTGGTCCTGAGGATGACTTGGAAGACATCAAGGATTCAGCTATGGAAGATATGAAGTCAGTCTTGAGCAGGATAGACAAGACTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTCGGTTCCTTGGAAGCATTATTGGAGTTTTTGAAGTCCCCGGCAGTGAGCATTCCTGTTAGTGGAATAAGTATAGGACCCGTTCATAAAAAAGACGTCATGAAAGCTAGTGTAATGCTTGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTGACTCCAGAAGCTCGAGAACTTGCTGATGAGCTTGGTGTGAAGATTTTTATTGCTGATATCATATATCACTTGTTCGACCAATTCAAGGCCTATATTGATAATCTTAAGGAGGAAAAGAAGAAAGAAGCCGCTGAGGAAGCAGTCTTTCCTTGTGTTCTCAAAATTCTACCAAATTGCATTTTCAATAAGAAGGATCCCATTGTGTTGGGGGTCGATGTGATTGAAGGCATTGCCAAGGTTGGCACACCAATTTGTATTCCTCAAAGAGAATTTATTGACATTGGTCGCATAGCATCTATTGAAAATAACCACAAACCTGTTGATTATGCAAAGAAAGGGCAGAAGATTGCCATTAAGATAGTTGGGCACTCTTCGGAGGAGCAGCAAAAGATGTATGGTAGGCACTTTGATTTGGAGGATGAACTTGTCAGCCATATATCAAGGAAGTCCATTGACCTTCTCAAAGCCAATTATCGGGATGATTTGTCCACGGATGAGTGGAGACTTGTGGTGAAATTGAAGAATCTTTTCAAGATACAATGA | 4080 | 41.64 | MGRKKPTARDDDSAPAAAHGGGKSKKKTFSVDDDEYSIGTELSEEAQVEEEKVVITGKKKGKKGNSKASQIKENDDDDDDVDGVSEIVITGKKKGKSKKGGSSSAFTASSFGLLEEEGMDGADDDDDSVLTAEKDDDEEEDSAIKFSGKKKSSKSSKKSGFSAVSAFTALDDENDEDVIENEIRVDEDIDDEPVIAFTGKKKSSKGGKKAGSAFTGFSGLDYEDEDRDDDKDGDEDVTSISFSGKKKKSAKTSKKSGNLFTAALADEENDDDVSISEPNKLDNDGVNEDDVNVIAFSGKKKSSKKKSTSTFTAIRDENAQGNEVKDVVVPEILNTVSSNLDSDLSNANKTEGVAETSKSKKKKKKSGRTAQEEDDLDKILAELGEGPTVSKPADPPLSSQEAQVENPPELVAPPEKEAEEESTESAAARKKKKKKEKEKEKKAAAAAAAAEGNDEKIEEVKTEIIEPKKGAAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERLRKEEEERRRLEELERQAEEAKRRKKEREKEKLLRKKLEGKLLTGKQKEEQRRLEAMRNQILSSAGGLPLSTSDPSAPAKRPKYQTKKTKPAHHQTNGNAQTKAVEHIEEKIQEKDVAETEILESEKIEAVELMHVEEKSDVIEATEDNEIQEDEDEDEWDAKSWDDAVVDLSLKSSFADEELESEPENGMKKDTKNGAGAKLAAPAQKGLPSQPIKSQDIENKKKQHEVEVADKGKRKDDAVKKKASIPDATPVPQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKTIRNAPILKTMKQQTKDVQNEFNMRLIQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVGPIVTTIRALLTPHPMKELRVKVGKQYNSNVGKQVYNPFEINLFTTVEPGKRNVSESGFSILNFIVLDISVHCHLNDRVFLWPGTYLHHKEIKAAQGIKITGQVIGPEDDLEDIKDSAMEDMKSVLSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIEGIAKVGTPICIPQREFIDIGRIASIENNHKPVDYAKKGQKIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSTDEWRLVVKLKNLFKIQ | 1359 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 26210804 | 26221605 | - | Lsi02G020200.1 | Lsi02g02020 | 656762 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g02020 | 1359 | Pfam | Elongation factor Tu GTP binding domain | 774 | 953 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi02g02020 | 1359 | PRINTS | GTP-binding elongation factor signature | 774 | 787 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi02g02020 | 1359 | PRINTS | GTP-binding elongation factor signature | 854 | 865 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi02g02020 | 1359 | PRINTS | GTP-binding elongation factor signature | 838 | 848 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi02g02020 | 1359 | PRINTS | GTP-binding elongation factor signature | 890 | 899 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi02g02020 | 1359 | MobiDBLite | consensus disorder prediction | 337 | 353 | - | - | |
Lsi02g02020 | 1359 | MobiDBLite | consensus disorder prediction | 452 | 565 | - | - | |
Lsi02g02020 | 1359 | MobiDBLite | consensus disorder prediction | 1 | 289 | - | - | |
Lsi02g02020 | 1359 | CDD | IF2_aeIF5B_IV | 1230 | 1325 | - | - | |
Lsi02g02020 | 1359 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 930 | 1003 | IPR015760 | - | |
Lsi02g02020 | 1359 | MobiDBLite | consensus disorder prediction | 685 | 756 | - | - | |
Lsi02g02020 | 1359 | MobiDBLite | consensus disorder prediction | 656 | 672 | - | - | |
Lsi02g02020 | 1359 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 1061 | 1359 | IPR015760 | - | |
Lsi02g02020 | 1359 | Gene3D | Translation factors | 1222 | 1359 | - | - | |
Lsi02g02020 | 1359 | SUPERFAMILY | Translation proteins | 1226 | 1358 | IPR009000 | - | |
Lsi02g02020 | 1359 | SUPERFAMILY | Initiation factor IF2/eIF5b, domain 3 | 1092 | 1221 | IPR036925 | - | |
Lsi02g02020 | 1359 | MobiDBLite | consensus disorder prediction | 117 | 140 | - | - | |
Lsi02g02020 | 1359 | PANTHER | PHOTOSYSTEM II PROTEIN D1 | 930 | 1003 | - | - | |
Lsi02g02020 | 1359 | MobiDBLite | consensus disorder prediction | 170 | 189 | - | - | |
Lsi02g02020 | 1359 | Coils | Coil | 418 | 447 | - | - | |
Lsi02g02020 | 1359 | Gene3D | - | 1109 | 1215 | IPR036925 | - | |
Lsi02g02020 | 1359 | Gene3D | Translation factors | 950 | 1015 | - | - | |
Lsi02g02020 | 1359 | TIGRFAM | small_GTP: small GTP-binding protein domain | 775 | 901 | IPR005225 | GO:0005525 | |
Lsi02g02020 | 1359 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 770 | 1003 | IPR027417 | - | |
Lsi02g02020 | 1359 | Coils | Coil | 1204 | 1224 | - | - | |
Lsi02g02020 | 1359 | Gene3D | - | 770 | 949 | IPR027417 | - | |
Lsi02g02020 | 1359 | MobiDBLite | consensus disorder prediction | 686 | 704 | - | - | |
Lsi02g02020 | 1359 | MobiDBLite | consensus disorder prediction | 728 | 756 | - | - | |
Lsi02g02020 | 1359 | MobiDBLite | consensus disorder prediction | 647 | 672 | - | - | |
Lsi02g02020 | 1359 | PANTHER | PHOTOSYSTEM II PROTEIN D1 | 1061 | 1359 | - | - | |
Lsi02g02020 | 1359 | PANTHER | PHOTOSYSTEM II PROTEIN D1 | 1 | 932 | - | - | |
Lsi02g02020 | 1359 | MobiDBLite | consensus disorder prediction | 366 | 381 | - | - | |
Lsi02g02020 | 1359 | Coils | Coil | 481 | 545 | - | - | |
Lsi02g02020 | 1359 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 770 | 1012 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi02g02020 | 1359 | Pfam | Translation-initiation factor 2 | 1096 | 1208 | IPR023115 | - | |
Lsi02g02020 | 1359 | MobiDBLite | consensus disorder prediction | 337 | 612 | - | - | |
Lsi02g02020 | 1359 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 1 | 932 | IPR015760 | - | |
Lsi02g02020 | 1359 | MobiDBLite | consensus disorder prediction | 412 | 431 | - | - | |
Lsi02g02020 | 1359 | CDD | IF2_eIF5B | 773 | 920 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g02020 | Lsi-Chr2:26210804 | Lsi04g01862 | Lsi-Chr4:25759528 | 5.11E-23 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g02020 | K03243 | - | csv:101204360 | 1305.04 |