Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02037 ATGACGCTTTACGAAGAGAATCCGGGGGAGTCTCACAAAGGTTTGGAAGGTGAGGATCTGTATGAAGAACTGTGGAAGGCTTGTGCAGGGTCTCTTGTTGAAGTTCCTGTCGATGGAGAAAGGGTTTTTTACTTTCCTCAGGGTCATATGGAACAATTGGAAGAGTCCACGAATCAGGAGCTTAATCACCAAATCCCTCATTTTGATCTCCCTCCCAAGATCCTATGTCGTGTTGTAAACATTCGTTTGCTGGCTGAAAAGGAAACAGATGAGGTCTATGCTCAAATCACTTTATACCCAGAAGCTGATCAAAGTGAGCCCCAAAGCCCTGATCCAGAGCCGCCTGAGCGTACAAAGCAAACTGTTCATTCTTTTTGTAAGATTTTGACTGCTTCTGATACTAGCACTCATGGAGGTTTCTCAGTTCTTAGAAAGCATGCCACTGAATGCCTTCCTCCCCTTGATATGAGTCAATCCACCCCAACTCAGGAGTTAGCTGCCAAGGATCTTCATGGGTATGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCACGAAGGCATTTGCTAACTACCGGGTGGAGTACATTTGTTACGTCCAAACGGCTGGTTTCTGGGGATGCCTTTGTTTTCTTAAGGGGTGACAATGGGGAACTGAGGGTTGGCATTCGACGTCAGGCTCGGCAGCAGAGTTTGATGCCTTCCTCCGTGATATCTAGTCATAGTATGCATCTTGGAGTTCTTGCCACTGCTTCTCATGCTGTTCGTACGCAGACCTATTTCGTTGTGTATTACAAACCGAGAACTAGCCAATTCATCATCAGCTTAAACAAGTACTTGGAGACAGTTAAAAATGGATATGAAGTGGGGATGCGCTTCAAGATGAGATTTGAAGGAGAGGAATCCCCAGAGAGAAGGTTCACTGGAACTATTGTTGGTGTTGGTGATATGTCTCCGCAATGGTTGGATTCTAAATGGCGATCGCTAAAGATTCAATGGGATGAACCTGCTACGATTCAAAGGCCCGAACGAGTTTCTCCATGGGAGATTGAACCCTTTGTACCTTCTGCCTCCTTAAACTTCACACATCCTGCCATAAAAAGTAAAAGGGCACGTCCTGTCGAGATTCCTCCTCCTGAAATTACTTCCAGTTCAGCTCCTTCGGGCTTTTGGCTTCAAGGATCGACAATCCCTCACGAAATACCCCAACTAAGTGGTACGAATGAAGTTCAAAGCAGCAATAACCGGGTTGTTTGGGCTCTCGGACAGCGAAAACTCGATAGCAATAGCAGCCACTGTAATCCAATAGCAAATGTTGAAGGCAATTGGCCTTCTCCTCCATTCAATATTTCCCTGAAGCTTTACCCAGATTCAACATTTGAAAGAGAACTTGTTCAAAAGCAGCCACCACTCTCTCCTTATTCTTCATCTGTCACTTCAAAGCCTAGTAGCGACCTTATACAGCATGATCAATTGGAGAAAGGGAATAAACCCGACATTTCTCTCGGTTGCCGAATATTTGGAATCGATTTGAAAAATAACTCTAGCATTGTCTCTTCCTTGGAAAGAAAACCGTGTTGCCCAATGACGGTGGCCGATGGTGCCAAAGATCCAGTAGCTGCAACAGCTGTGACACCTCAAGTCGATGCTGGAAACCTCTCACAGCCTTCGAAGGAGCAGCTGCAAGTGTCATCAGAGCTGTCGATGAAGGGCACACAGACAAAACACATTTCCAATCTTTCGTCGAGAACCCGTACAAAGGTGTAA 1767 45.39 MTLYEENPGESHKGLEGEDLYEELWKACAGSLVEVPVDGERVFYFPQGHMEQLEESTNQELNHQIPHFDLPPKILCRVVNIRLLAEKETDEVYAQITLYPEADQSEPQSPDPEPPERTKQTVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQSTPTQELAAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVSGDAFVFLRGDNGELRVGIRRQARQQSLMPSSVISSHSMHLGVLATASHAVRTQTYFVVYYKPRTSQFIISLNKYLETVKNGYEVGMRFKMRFEGEESPERRFTGTIVGVGDMSPQWLDSKWRSLKIQWDEPATIQRPERVSPWEIEPFVPSASLNFTHPAIKSKRARPVEIPPPEITSSSAPSGFWLQGSTIPHEIPQLSGTNEVQSSNNRVVWALGQRKLDSNSSHCNPIANVEGNWPSPPFNISLKLYPDSTFERELVQKQPPLSPYSSSVTSKPSSDLIQHDQLEKGNKPDISLGCRIFGIDLKNNSSIVSSLERKPCCPMTVADGAKDPVAATAVTPQVDAGNLSQPSKEQLQVSSELSMKGTQTKHISNLSSRTRTKV 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26424809 26428667 - Lsi02G020370.1 Lsi02g02037 656779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02037 588 MobiDBLite consensus disorder prediction 467 486 - -
Lsi02g02037 588 CDD B3_DNA 123 225 IPR003340 GO:0003677
Lsi02g02037 588 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 588 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lsi02g02037 588 Pfam Auxin response factor 251 330 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lsi02g02037 588 PANTHER AUXIN RESPONSE FACTOR 11 10 588 - -
Lsi02g02037 588 Gene3D - 287 358 - -
Lsi02g02037 588 SUPERFAMILY DNA-binding pseudobarrel domain 116 254 IPR015300 -
Lsi02g02037 588 SMART B3_2 125 227 IPR003340 GO:0003677
Lsi02g02037 588 Pfam B3 DNA binding domain 125 226 IPR003340 GO:0003677
Lsi02g02037 588 MobiDBLite consensus disorder prediction 99 121 - -
Lsi02g02037 588 MobiDBLite consensus disorder prediction 469 486 - -
Lsi02g02037 588 Gene3D - 122 227 IPR015300 -
Lsi02g02037 588 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677
Lsi02g02037 588 MobiDBLite consensus disorder prediction 550 588 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02037 Lsi-Chr2:26424809 Lsi09g00162 Lsi-Chr9:1700937 0 dispersed
Lsi02g02037 Lsi-Chr2:26424809 Lsi01g00116 Lsi-Chr1:1225345 1.12E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24873 PF02362 B3 2.00E-21 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02037 K14486 - csv:101205805 1085.48