Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02100 ATGGCGGAAATCTCAGAACCTTCGAAGCCTCCACAACTTGACTCCGGATCATCGGAGGCCGGACTTTCACAGTTTGCTTTTGACCCCAAAACCATGCGGAAGACTAAGCCTGGATTCAAGCGTCTAATTCTTACCATCTCCGTCTTCTCCTCTTTTCTCTTAGGTCTTCCATTTCTATGGAAATCCGTCGAAATCTACCGCGCGCCACTTCCGTTCAGGGACATCGACGCCCTCTCTTCTCATATAGAATCGTCGCCATTGCAATTTCCCTGTAGTTTTCGGGCTATATTTGTTGGATTTGATTCCATGGCCTCTAGAGCTGAGCACCTAAAATCATCTATCCTCGATGAGATGACTAAACTGTCTTCTACATCTTCACTTTGTGGCAGTTGCAACAACTATGCTGTCTCGGTAGTTATAGAATCGGGTTCTGATTGCTCACAGACACGCAGTGACGCATCCTCGTGTTCTTGGCAGTGTGGAGCTCTCAGTGCTTCTGATTTTGCTGCTTCTTTGGAAAATGGTCTTGATAATGCCGATGATTTCTTGGAGGTTGCTCTGGGAGGTTGTTCGAAGTCCGCTTCTGGTGGGAAAGTTTATAGTGTAGTGGTGATGAACAGGGGCGAGAATGTGGAGGCTACTATCGGAAAATATCGTCATGGTTGGATTGTTGGAAGGGTTTCAGAGGCGGAAGCCGTATCGAAAGTAGCGGAAACTTTTGTTAAGTTATTTGGTAATGGTGGAAGGGAGGAGGGATTAATTCCTGGGGAGTTTATGCCTGTTGGTGCTGATGGAAAGATTTTTCTTTCTTTTAATTTGTTGAATGCTGATCCAGATGATTGGATATATGACTGGGATTTCCAGGCAGTAGATGAAGTTCTATTGAAACCTTTAATCAAGGAATTAGCACCTGTAGCAAATGTCTCTGTTGAGAGTCAGGTGAATTCAAACGAGTGGCATTTGGATACTTCAATTGCAGCAGGAGGGAGATATATACCATCAGCAAGGGAGTTCCCTCTTCTTTTACAGCTTCCTGATGGCCATATTTCAGAAACAAATGGGTTTATATCTCCTATGTGGGGAGGTGTAATTGTTTGGAACCCTAAAGGCTGCCTGAGAAACCGTGAAAGTAAGCAACACCATAGGCATATGATTTCATATCCGGAGCTGGAGAGAATTGTTGAAGTTTTCCTGGGGCAATTTCGGCAACTTTTTGGTCTAAAGTCCAATCCCCAACATGTTGGTCTATCAGGCACATTCAACATTTTAACTAGTGAGAAAGGATTTACAGAATGGGAAATGGATTTTCTCTCAAGGCAGCATTCATGTTTTAATCTTCATTCATGTGCTTCATCCCTCGGATCTCTTTCCAGATTGGTTCAATCACTCCCGAGGATGATTATCATTGATGAGATTGGAAAACAGGTAAAATATTCTCTCGAGGCTGCAAACTTAGCCCAGAAAAATGCCTCTGTGGGAGTTTTTGATGCTGCAGCCATCTCTTCCAGGCAAGCAAGATCACTGGCAGAAGATGCGTTTTTTCACCCATCAATAATGTCCGTCAGCTATTTTTCATTTGAGCATTGCTTTGCTGTCTACTCGCAACGGTCACATGTACCAGCTTTTGGAAATTGGGAAAGTGAAGGGAATGTTCCATACACAGTGTTCTTTGACAAGGCCAGAAAGGGCAGAGGCGGCGGACCAATCAGAAACCCAAATGATCCTGAGGAATATCCAGACATCCTCATGGACAACTCACATGAAGCTGCTCCAACCAAATCCAATCCCAAGGACGACATTCCAACGACAAAACCTACCACCCATGAGAGGAGGCATAGTCGAGAAGATGGCGGCTTACGCCCCTACGCCAACTCTCCCGGCAATCGTGAAATTCCCGGTCGGAGACAGAGCGGCTCCGAATATAGCATCGACCGCTCTCCCCTCCATCGTCAGGCAAAGCCCTCAGGAAGAGACAGCCCGGTGACGGAGGGCAAGAACTTTGAGGGTGGCAATGGCAATCGTGGAAAGACTAGAATGAAGAATGATGCCGCTCCGGAAGGGACGGCGGTGCCGAAGTTTGGATCATGGGATGTGAATAATCCGGCGTCGGCCGATGGTTTTACACACATTTTTGGTAAAGTTCGAGAGGAAAGGATGGGGCCGGGAACTCCGCCGCCGCAGCAATCTTCACCTTACAACAATGTTAATAATCGAAGACCCGACGACAGTGCCCAGTGGGTTTTTGTTTCTGGATGTTTGATTGAAGGGATTATGGTGAGGGAACAACGAGTTGAATCGTTTTACACTAAACTTCGTGACTCTGTCGCGGCTTCTTCTTTGTCTCCTCTCCTTATTTTTCCTTCCACTTCTGATGTAGACTCGCTCTGTGCCTTGAAAATTATTTTTAAAGTTCTTGAGTCTGATTCTGTTCGATACGCTTGTTACCCTGTGTCTTCTTTTCAAGAAATTCATAAATATGCTGGTCCTAGTTTGACTTCCTCGTCTGCTGATCCGATTTCGATTCTTTTGATTAATTGGGGATGTCATCGAGATCTTAGGAAGGTTTTGAGTTTAGGTCCGGCTGCTCGTGTGTTTGTTGTTGATAGTCATCGCCCGATTCATCTTCATAATCTGAGTAGTGAGAATGAACAAGTGGTTGTGCTTTATACGAAAGACGACGAGCTCCAGGCCGATTTGGCTTATGATTTTGATGTCTCCGCTTTGGCGAATGCGAGCGATTTGAACAGCGATGATGAGATTGATGACGTATCGGACAGCGATGATGACAATGATAGTGAAAGCGATGAAGAAGGCAGGCGTGGGTCGAGGAAAAGGAGGAGGGTTGATAAGGAAAATGAAGAGGATCCTGTTCAGCTTTATAGAAAATTGAAAAGGGGATACTATCAAATGGGTACCTTTCATGGTAGGCCTTCAGGGTGTTTGATGTATGATCTGTCTCATTCGTTGAGGAAGAACACAAATGAATTACTATGGCTGGCTTGTGTATCTTTAACAGATCAGTTTGTACACGAAAGATTGACGGATGAGAGGTACCAAGCTGGGGTTATGGAGCTTGAGCAACACATTAACAGTTCAGGGAACTTGAATGCTGTTAACTCTGTTACTCTTAAAGATGGCACCAAGATCCGAGCCCCTGATGCATCTAGAATCACTTATGATGATGAACCCAGATTAATGCTCTTGCAGGAGTGGAATTTGTTTGATTCAATGCTTTGTTCTTCATACATTGCAACCAAGTTAAAGACATGGAGTGACAACGGAATGAAGAAGCTCAAATTGCTTCTAGCACGTATGGGGTTTGCACTTGTGGATTGCCAACAAAAGTTCCAATACATGAATATTGAAGTGAAACGAAAGATGAAGGACGAATTCGAGCGATACCTTCCTGAATACGGCTTAACCGATTTCTACTACAGAAGTTTCTTGAGGTTACATGGTTATAGCTCAAAAGTGTCAGCAGCAGATGTGGTATATGGGGTCACTGCATTGCTCGAGTCCTTTGTCAAATCGGATGGTTCTAGTGCTTCCAAGCAGTTTGGAGTGGCTTATGATGCATTGTCATTGAACAATCTTGATAAGCTCAAAGCTGGAATGCAGCAGGCAATCAAGGTCCAGAGATCAATTCTTAGACAGGGGAGCTCTGCAATTACAAAGAGTGGTTGTATAAGAAGTGGGAGAAAATTTCGTTGGGTGAAGCTTGAAGATTCTGTAGACACCAAATTGTTGGGCTATCCTCAAGCACTCACAAAATTCTGCTACTTTATAATGGATGCTTTGCGAGAGAGAGGAGCCAGAATGAAGCCTTTGCTATGTGCTTGCTTATCTCAAGAGCCCAACAAAGTACTGATCGTTGGAGTTTGTGGGAAGCCTAGGCTCGGGGCATCTCAAGGCAATGCATTTGGGAGAGCTTTTCGAGACGCAGGGGAGGAAATTAGCTCGGAGTTTTTCCATGAGATGTTTGAATCTTCATGGATTCTTCTTGAAAAAACTTCAGTTAACTCTTTCATGGTTAGATTGACTCAGAAACTGTAA 4053 44.49 MAEISEPSKPPQLDSGSSEAGLSQFAFDPKTMRKTKPGFKRLILTISVFSSFLLGLPFLWKSVEIYRAPLPFRDIDALSSHIESSPLQFPCSFRAIFVGFDSMASRAEHLKSSILDEMTKLSSTSSLCGSCNNYAVSVVIESGSDCSQTRSDASSCSWQCGALSASDFAASLENGLDNADDFLEVALGGCSKSASGGKVYSVVVMNRGENVEATIGKYRHGWIVGRVSEAEAVSKVAETFVKLFGNGGREEGLIPGEFMPVGADGKIFLSFNLLNADPDDWIYDWDFQAVDEVLLKPLIKELAPVANVSVESQVNSNEWHLDTSIAAGGRYIPSAREFPLLLQLPDGHISETNGFISPMWGGVIVWNPKGCLRNRESKQHHRHMISYPELERIVEVFLGQFRQLFGLKSNPQHVGLSGTFNILTSEKGFTEWEMDFLSRQHSCFNLHSCASSLGSLSRLVQSLPRMIIIDEIGKQVKYSLEAANLAQKNASVGVFDAAAISSRQARSLAEDAFFHPSIMSVSYFSFEHCFAVYSQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPDILMDNSHEAAPTKSNPKDDIPTTKPTTHERRHSREDGGLRPYANSPGNREIPGRRQSGSEYSIDRSPLHRQAKPSGRDSPVTEGKNFEGGNGNRGKTRMKNDAAPEGTAVPKFGSWDVNNPASADGFTHIFGKVREERMGPGTPPPQQSSPYNNVNNRRPDDSAQWVFVSGCLIEGIMVREQRVESFYTKLRDSVAASSLSPLLIFPSTSDVDSLCALKIIFKVLESDSVRYACYPVSSFQEIHKYAGPSLTSSSADPISILLINWGCHRDLRKVLSLGPAARVFVVDSHRPIHLHNLSSENEQVVVLYTKDDELQADLAYDFDVSALANASDLNSDDEIDDVSDSDDDNDSESDEEGRRGSRKRRRVDKENEEDPVQLYRKLKRGYYQMGTFHGRPSGCLMYDLSHSLRKNTNELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINSSGNLNAVNSVTLKDGTKIRAPDASRITYDDEPRLMLLQEWNLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNIEVKRKMKDEFERYLPEYGLTDFYYRSFLRLHGYSSKVSAADVVYGVTALLESFVKSDGSSASKQFGVAYDALSLNNLDKLKAGMQQAIKVQRSILRQGSSAITKSGCIRSGRKFRWVKLEDSVDTKLLGYPQALTKFCYFIMDALRERGARMKPLLCACLSQEPNKVLIVGVCGKPRLGASQGNAFGRAFRDAGEEISSEFFHEMFESSWILLEKTSVNSFMVRLTQKL 1350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27187816 27206729 + Lsi02G021000.1 Lsi02g02100 656842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02100 1350 MobiDBLite consensus disorder prediction 916 934 - -
Lsi02g02100 1350 Pfam CDC45-like protein 784 1349 IPR003874 GO:0006270
Lsi02g02100 1350 PANTHER CDC45-RELATED PROTEIN 758 1350 IPR003874 GO:0006270
Lsi02g02100 1350 MobiDBLite consensus disorder prediction 935 956 - -
Lsi02g02100 1350 MobiDBLite consensus disorder prediction 916 956 - -
Lsi02g02100 1350 Pfam Phosphatidylinositol-glycan biosynthesis class S protein 49 314 IPR019540 GO:0016255|GO:0042765
Lsi02g02100 1350 Pfam Phosphatidylinositol-glycan biosynthesis class S protein 314 533 IPR019540 GO:0016255|GO:0042765
Lsi02g02100 1350 MobiDBLite consensus disorder prediction 1 20 - -
Lsi02g02100 1350 MobiDBLite consensus disorder prediction 602 618 - -
Lsi02g02100 1350 PANTHER - 758 1350 - -
Lsi02g02100 1350 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 686 718 IPR008700 -
Lsi02g02100 1350 MobiDBLite consensus disorder prediction 716 737 - -
Lsi02g02100 1350 MobiDBLite consensus disorder prediction 561 698 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02100 Lsi-Chr2:27187816 Lsi05g01853 Lsi-Chr5:25763855 4.02E-12 dispersed
Lsi02g01085 Lsi-Chr2:12186825 Lsi02g02100 Lsi-Chr2:27187816 3.80E-25 transposed
Lsi02g02100 Lsi-Chr2:27187816 Lsi05g01125 Lsi-Chr5:19036814 6.70E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02100 K06628 - csv:101221761 1093.18