Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02108 ATGGAAAACACTAAACTTTCAATAGCTCTCTTTGCTACTTTACTCCTCACAAATGCTATTATTGTTATAGCCAATACCAATGAGAATAGTGTCACGAGTAACGATTTGAGTGTCATAGAAAACTCATGTGCCAATACTCTTTATCCTCAACTATGTCATTCAACGATATCCTCTATCGTTGGAACATCCAATTTGTTGAGCTTGAAAGATATTGTTGAAGTGACGTTGAGTGTTGCTATTAATGCAGCTAAGCATAACCATAAGAACATCAACAAACTTACGATGTCACTTAATGATGTTAGTAAACGAGACAAGATTGCCCTTCATGATTGTATCGAAACCACCGACAGGGTGATTTATGAGCTTCACAAGGCGGTAGAGGATCTTCGTGAGTACCCCAACGAGAAATCTCTTATCTTGTACGCTGATGACCTCAAAACCTTTCTCAGTTCTGCCATTACTAATCAGGAAACTTGTTTGGACGGATTATCACATGACAAAACAGAGAAAAGGGCGTTGAGGCTTATTGAAATCACACATATTCACGTGACAAAGTTGTGCAGTAATGCATTGGCTTTGATTAAGAAATTGACTGACACTGCTTTAACTAATCACAAAAGCACTCTGATCCCTCACTTCCCTAATAAAATAACCTCTTCATCCTGGCATACTGAAGACCCCAAAATTGAGGAAGGTGGTGAGAATAGAGGAAGGGAGGATGATTTAGAAGATGGAATAAAGTGGCCAGAATGGATGTCAAGCCATGACCGGAGGCTTTTGGAGTCATCGTATGAAGCTACGGCGGACGTGGTGGTGGCGGCAGATGGAAGTGGAAATTATAAAACGGTGTCGGAGGCGGTGGCGGCGGCGCCGAGTAAGAGCAGCAAAAGATATGTAATAAAAATAAAGGCAGGAGTTTACCCGGAAAATGTTGATGTGCCAAGTAGTAAAACGAATATTATGTTTTTGGGAGATGGAAGATCCAACACCATTATCACTGCTAGCAGAAGTGTTGGGGGTGGCAGCACAACCTTCAATTCCGCCACAGTCGCTGCTGTGGGGGATGGATTCTTAGCTCGAGACATAACCTTTCAAAACACAGCTGGAGCAGCCAATGACCAAGCTGTAGCTCTCCGTGTTGGCTCAGATAAGTCAGCCTTCTACCGTTGTGGCGTGCTTGCCTATCAAGACACTCTCTACGTCCACTCGAACCGTCAGTTCTTCGTCAACTGCGTCGTTGCAGGCACAGTCGACTTCATCTTCGGAAACGCAGCAGTCGTAATCCAAAACTCCAACCTCACCCCTCGCAAACCAGGGCCTAAGCAACAGAACATGGTGACAGCACAGGGAAGAACCGACCCGAATCAAAACACGGGAATCGTGATCCAAAAGTGTACGATAAAAGCGACGTTGGACTTGGAGCCGGTGATAAAAGAATTCCCAAGCTTTCTTGGGAGACCATGGAAGGATTATGCACGGGTTGTGGTAATGCAAACGGAAATAAGCAATGTGATAGACTCAAAAGGGTGGTCGCCATGGGGTAGTGAAATAAAGAAACCCTTCTTTGCGGAATATGATAATAAAGGAGCTGGAGCCAATACTTGTTGTAGAGTGACATGGTCTACTATTATTAATGAAGCTCAAGCTAAGACCTTTACGGCTGGACCATTCATTGGTGGTGCTAATTGGCTCCCATCCACTGGCTTCCCCTATCAGCTTGGTCTCTAA 1728 44.21 MENTKLSIALFATLLLTNAIIVIANTNENSVTSNDLSVIENSCANTLYPQLCHSTISSIVGTSNLLSLKDIVEVTLSVAINAAKHNHKNINKLTMSLNDVSKRDKIALHDCIETTDRVIYELHKAVEDLREYPNEKSLILYADDLKTFLSSAITNQETCLDGLSHDKTEKRALRLIEITHIHVTKLCSNALALIKKLTDTALTNHKSTLIPHFPNKITSSSWHTEDPKIEEGGENRGREDDLEDGIKWPEWMSSHDRRLLESSYEATADVVVAADGSGNYKTVSEAVAAAPSKSSKRYVIKIKAGVYPENVDVPSSKTNIMFLGDGRSNTIITASRSVGGGSTTFNSATVAAVGDGFLARDITFQNTAGAANDQAVALRVGSDKSAFYRCGVLAYQDTLYVHSNRQFFVNCVVAGTVDFIFGNAAVVIQNSNLTPRKPGPKQQNMVTAQGRTDPNQNTGIVIQKCTIKATLDLEPVIKEFPSFLGRPWKDYARVVVMQTEISNVIDSKGWSPWGSEIKKPFFAEYDNKGAGANTCCRVTWSTIINEAQAKTFTAGPFIGGANWLPSTGFPYQLGL 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27269539 27274973 - Lsi02G021080.1 Lsi02g02108 656850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02108 575 MobiDBLite consensus disorder prediction 218 242 - -
Lsi02g02108 575 Gene3D - 263 575 IPR012334 -
Lsi02g02108 575 MobiDBLite consensus disorder prediction 223 242 - -
Lsi02g02108 575 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Lsi02g02108 575 SUPERFAMILY Pectin lyase-like 266 574 IPR011050 -
Lsi02g02108 575 PANTHER PECTINESTERASE 6 574 - -
Lsi02g02108 575 PANTHER PECTINESTERASE 6 574 - -
Lsi02g02108 575 SMART PMEI_2 34 193 IPR006501 GO:0004857
Lsi02g02108 575 Pfam Pectinesterase 269 560 IPR000070 GO:0030599|GO:0042545
Lsi02g02108 575 Pfam Plant invertase/pectin methylesterase inhibitor 38 193 IPR006501 GO:0004857
Lsi02g02108 575 TIGRFAM PME_inhib: pectinesterase inhibitor domain 12 198 IPR006501 GO:0004857
Lsi02g02108 575 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 199 IPR035513 -
Lsi02g02108 575 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 198 IPR035513 -
Lsi02g02108 575 CDD PMEI-like_3 42 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02108 Lsi-Chr2:27269539 Lsi02g02855 Lsi-Chr2:34762746 0 dispersed
Lsi02g02108 Lsi-Chr2:27269539 Lsi07g00641 Lsi-Chr7:6839640 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02108 K01051 - csv:101221055 871.692