Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02126 ATGAACGATGTGAGAGATCAAGAACAAATTCCTGAATTAGATTTTGGAAAATTGGAAGTGGTGACGGCGCTCGGCCGGGGAGCGAAGGGAGTCGTGTTCTTGGCTCGAAATGCGGCGGAGGACGACCACGGCGACGGCGAATGGTTGGCCTTGAAGGTGATTTCGAGAGAATTAATCGAGAGGAAGGCTAAGATTGTGAATAGCGATGGAGCTGAGTATCGCAGAGTTTGCTTTGAACGAGAAGTTTTGCGGCTTTTTCGGCATCCGCTCTTGCCTCGATTGCGAGGAGTTTTGAATACTCAGAAAGTTGTAGGTTACGCCATTGATTATTGTAATGGACGAGATCTTAATTCTCTCAGGAAAAAACAGACCGAAAAAATGTTCTCCGATGACGTTATTAGGTTTTACGCTGCGGAATTAGTTATGGCGTTGGAGTATGTACACAGTTTAGGAATAGTTTACAGAGATTTGAAGCCGGAGAACGTTATGGTTCAACACAACGGCCATATAATGCTTGTGGATTTTGATCTCTCTACAAGGCTCTCTCAAAAATCTCCCAAATCGTCTCCGTCTCTTTCGCCGTCGCCATCGCCGACGGTAGAGGTTTTGGCGGAGTCTAAATTGGCGATGAAGGAAAAGATTAACAAGAAAAAGAAGAGGAAGCGATTCTTTCATTTTCACCGGTTCTGCAATTCCGGCGTATCACCGGAGGAATCCGAACATCAGGCTAAGACGGCGGAGAAACTAAGATCGCTGCCGGAGTCGTCGGATTCGGAGTCGTCGGAGAAGTCGAACTCGTTCGTCGGAACAGAGGACTACGTAGCGCCGGAGATCGTTACCGGGAAGGGTCATGACTTCGCCGTGGACTGGTGGTCACTCGGCGTAGTTCTGTATGAGATGCTGTACGGAACGACGCCGTTTAGGGGATCGAATCGGAAGGAAACGTTCTATCGGATTCTGACGAAGTCGCCGGATCTGTGCGGCGAAGCGACGCCGTTGAGGGATTTGATCAGGAAATTGCTGGAGAAAGATCCGAGGAAGAGGATCGAACTGGAGGAAATCAAGGGCCACGATTTCTTCAAAGGGACTGAGTGGGATTTAGTTCTGGAAATGCCCCGGCCGCCGTCGCTGCCTGAAATGGCGGAAGAGGACATAAATGGAAAAAACTTAATTGATGTGGAGTCTTTTGTCCAAGACGTATTTTGCAGCGAAACGGAGAAGAAGAATCATATTAACGGTGATGAAGGAAAAGGATTAATTCCTAATTACACGGAGTCTGACACATTTCATGCATTCTAA 1299 47.73 MNDVRDQEQIPELDFGKLEVVTALGRGAKGVVFLARNAAEDDHGDGEWLALKVISRELIERKAKIVNSDGAEYRRVCFEREVLRLFRHPLLPRLRGVLNTQKVVGYAIDYCNGRDLNSLRKKQTEKMFSDDVIRFYAAELVMALEYVHSLGIVYRDLKPENVMVQHNGHIMLVDFDLSTRLSQKSPKSSPSLSPSPSPTVEVLAESKLAMKEKINKKKKRKRFFHFHRFCNSGVSPEESEHQAKTAEKLRSLPESSDSESSEKSNSFVGTEDYVAPEIVTGKGHDFAVDWWSLGVVLYEMLYGTTPFRGSNRKETFYRILTKSPDLCGEATPLRDLIRKLLEKDPRKRIELEEIKGHDFFKGTEWDLVLEMPRPPSLPEMAEEDINGKNLIDVESFVQDVFCSETEKKNHINGDEGKGLIPNYTESDTFHAF 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27482479 27484144 - Lsi02G021260.1 Lsi02g02126 656868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02126 432 MobiDBLite consensus disorder prediction 240 257 - -
Lsi02g02126 432 Gene3D Phosphorylase Kinase; domain 1 18 114 - -
Lsi02g02126 432 PANTHER FLIPPASE KINASE 1-RELATED 6 410 - -
Lsi02g02126 432 ProSiteProfiles Protein kinase domain profile. 18 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02126 432 SMART serkin_6 18 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02126 432 SUPERFAMILY Protein kinase-like (PK-like) 16 387 IPR011009 -
Lsi02g02126 432 Pfam Protein kinase domain 19 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02126 432 Pfam Protein kinase domain 258 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02126 432 Gene3D Transferase(Phosphotransferase) domain 1 115 187 - -
Lsi02g02126 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Lsi02g02126 432 PANTHER SERINE/THREONINE-KINASE OXI1-LIKE PROTEIN 6 410 - -
Lsi02g02126 432 Gene3D Transferase(Phosphotransferase) domain 1 258 379 - -
Lsi02g02126 432 MobiDBLite consensus disorder prediction 233 267 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02126 Lsi-Chr2:27482479 Lsi10g01047 Lsi-Chr10:14698517 1.75E-91 dispersed
Lsi02g02126 Lsi-Chr2:27482479 Lsi10g01180 Lsi-Chr10:16085006 5.43E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83422 PF00069 Pkinase 2.00E-29 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02126 K20714 - csv:101223223 649.047