Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02133 ATGGAGAACGAATTCTTCCTCAATTCTACTGGAATTTCTCAATCTCTTATGCATTTCGACTCCAATCCTTCCATGGCTACCTGGCATCATCCGTTTTCCTCCGCCATGGATGTTCCACCTCACTCTCAATCTCAACTTCAAGTTCCAGAGCTTAATCATTGTTCTTCCTCTCACCAATCCCCACCGGATTGTTTTCTCAATCCGGTTCCCGATCAGAGCTTTCAATTCGATTCTGCTCTTAGTTCCATGGTTTCTTCTCCAGCGGCCTCGAATTCTAACCTAACGAACGAGAGCTTCGTGATCAGAGAATTGATCGGGAAATTAGGTGGAAATTCTGAGAGGAGGATCTTGGAATTGAATTCTACTGCCGCATTGACTCCTTCTTCTTCCAGTGTGGCGGAATTTTCGTCCGATCCTGGATTTGCTGAGCGAGCTGCTAGGTTTTCGTGTTTTGGAAGTAGGAGCTTCAATGGCCGTCAATTGACGAATGAATTCGGTAATTATAGATCTCATCTCTCGATCACTAACGAGAAATTGAGCCGAGTTTCGAGTAGTCCGTCGCTTAAAGCACTTGGATCTGAAACGAATTTGCAAGAGCACAAGAATAATTCATCTTCGCAAGAAGATGAATCGTCTCTCTCGAATCCAGACAAAACGATTTCGAATCCACGGAAGAGAAAGGCAATTACAAAGCCTAAACTCAAAGAACCGGTGGTTGAAGCTGCTCCCGAGAAGGGAAGTCCGAAGAAATTGAAGGCAGTGGAAACAAAGGAAAACGAAAAGGGGAACGTGAAAACGGAAGAGGATTTGAAGAAAACCGATGAAAATTTAGCGGAAGAGGAGAAGCAAACGAAGGCGAATTCCAAACCTCCTGAAGCTCCTAAGGATTACATTCACGTTAGAGCAAGAAGAGGCCAAGCAACTGATAGCCATAGTCTTGCTGAAAGAGTTAGAAGAGAGAAAATCAGTGAAAGAATGAAGCTTCTTCAAGATCTTGTACCAGGACGCAACAAGGTTACTGGAAAAGCTCTGATGTTGGATGAGATTATCAACTATGTGCAGTCATTACAACACCAAGTTGAGTTTCTGTCCATGAAGTTGGCTTCTGTGAATACAACCAGGGTGGATTTCAACATGGATTCTCTTATCTCAAAACAAACGTACCAATCAGGAACCAGTTTGACACATCCTCAAATTTCCCCTATAGATTCCTCAGCTTCAAGCTTTTATGGGCACCAAAATTCCTCTCTCCCAACCACCTCTCATTGCTCTGTGGACCCTCTTGACTCTGTTTTATGCCAAAATCTTCCCATTCAACTCCCTCCTCTCAATTCCTTCCTTCAAAATCCCTCTCAGTATCCAAATTTCGGAGAAGATGAACTTCAAAGCATTGTTCAAATGGGGTTCGTCCAAAATCAGACCCAAGAAATATCATTGCAATCTCACAATTTCAACTTAGGCTCAGACCAAATGAAAATTGAACTCTAA 1488 42.94 MENEFFLNSTGISQSLMHFDSNPSMATWHHPFSSAMDVPPHSQSQLQVPELNHCSSSHQSPPDCFLNPVPDQSFQFDSALSSMVSSPAASNSNLTNESFVIRELIGKLGGNSERRILELNSTAALTPSSSSVAEFSSDPGFAERAARFSCFGSRSFNGRQLTNEFGNYRSHLSITNEKLSRVSSSPSLKALGSETNLQEHKNNSSSQEDESSLSNPDKTISNPRKRKAITKPKLKEPVVEAAPEKGSPKKLKAVETKENEKGNVKTEEDLKKTDENLAEEEKQTKANSKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGRNKVTGKALMLDEIINYVQSLQHQVEFLSMKLASVNTTRVDFNMDSLISKQTYQSGTSLTHPQISPIDSSASSFYGHQNSSLPTTSHCSVDPLDSVLCQNLPIQLPPLNSFLQNPSQYPNFGEDELQSIVQMGFVQNQTQEISLQSHNFNLGSDQMKIEL 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27636934 27639838 + Lsi02G021330.1 Lsi02g02133 656875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02133 495 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 304 371 IPR036638 GO:0046983
Lsi02g02133 495 MobiDBLite consensus disorder prediction 232 294 - -
Lsi02g02133 495 MobiDBLite consensus disorder prediction 178 294 - -
Lsi02g02133 495 Coils Coil 263 283 - -
Lsi02g02133 495 Pfam Helix-loop-helix DNA-binding domain 310 357 IPR011598 GO:0046983
Lsi02g02133 495 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 110 IPR024097 GO:0006355
Lsi02g02133 495 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 306 356 IPR011598 GO:0046983
Lsi02g02133 495 PANTHER BHLH TRANSCRIPTION FACTOR 123 488 - -
Lsi02g02133 495 SMART finulus 312 362 IPR011598 GO:0046983
Lsi02g02133 495 MobiDBLite consensus disorder prediction 178 219 - -
Lsi02g02133 495 Gene3D - 303 375 IPR036638 GO:0046983
Lsi02g02133 495 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 123 488 IPR024097 GO:0006355
Lsi02g02133 495 PANTHER BHLH TRANSCRIPTION FACTOR 2 110 - -
Lsi02g02133 495 CDD bHLH_AtBPE_like 296 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00525 Lsi-Chr2:4541496 Lsi02g02133 Lsi-Chr2:27636934 3.43E-43 dispersed
Lsi02g02133 Lsi-Chr2:27636934 Lsi05g01353 Lsi-Chr5:21424922 5.90E-90 dispersed
Lsi02g02133 Lsi-Chr2:27636934 Lsi04g01455 Lsi-Chr4:22304152 1.38E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24879 PF00010 HLH 2.60E-06 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02133 - - csv:101204984 839.336