Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02135 ATGGATGAAGATTTTGATATCCCTGCTGCCGCTGACATGAACGAGGACTTGGATCTTCCTGATGAAACCGTTGCTTTCAAGGTTGGGGAGGAGAAAGAAATTGGAAATCAAGGCTTGAAGAAGAAGCTTCTTAAGGAAGGTGAAGGATGGGTAACTCCTGAAAATGGCGATGAGGTTGAAGTTCACTATACTGGGACTTTGCTTGATGGGACTCAGTTTGATTCCAGCCGCGATCGTGGAACCCCGTTCAAGTTCACTCTTGGTCAAGGAACATTGGTTACCTGGGCATTTTATTTGGTCTATATGACCTGTTATGAGCTTCACATACAAAAAGGAACTTCTGTGGCTCTTCGTGGTTCTTTCTTACAGATCTGCACTTTGAGATGGCAAGTGATCAAAGGATGGGATTTGGGTATCAAAACAATGAAGAAAAATGAAAAAGCTCTTTTTACCATTCCTCCTGATCTGGCATATGGTGAATCTGGCTCCCCACCAACCATTCCTCCTAGTGCGACATTGCAGTTCGATGTTGAGTTACTATCTTGGACAAGCGTTAAGGACATATGTAAGGACGGAGGAATATTCAAGAAGATCCTAACTGAAGGGGACAAATGGGATAATCCAAAGGACCTTGATGAAGTGCTAGGCAATAAAGCGCACCTCAAAACAGGTTACTTTTGCCCTGCTCTCGCGAAAGCTATAAAAACCATGAAGATAGGGGAAAAGGCACTCCTCACGGTGAAGCCACAATATGGGTTTGGGGAGAAAGGTAAATCAGCCTCTAGTAATGAAGGTGCAGTTCCACCAAATGCATCTCTTGATATTACTTTAGAGTTGGTATCTTGGAAGACTGTTTCAGAAGTTACCCCTGACAAAAAGATTATCAAAAAAATTCTGAAAGAAGGAGAAGGTTATGAGAAGCCAAATGACGGAGCCATTGTTAAAGTGAAATTGATCGGGAAGTTGGGAGATGGCAAGATATTTTTGAAGAAGGGATATGATGATGGTGAAGAGCCATTTGAGTTTAAAACAGATGAGGAACAAGTGATTGATGGCCTTGACAAGGCTGTGGCGACAATGAAGAAAGGTGAGACAGCCCTGCTGACAATAGCACCAGAGTATGCTTTTGGTTCGTCTGAGTCACAACAGGATTTAGCTGTAGTTCCTCCAAACTCAACTGTGTATTACGAGGTTGAGCTGGTGGCTTTTGACAAGGAGAAAGAGTCATGGGATATGAATAACCAGGAAAAGATTGAAGCGGCTGGTAAAAAGAAGGAAGAAGGAAATGTGTTGTTTAAGTCTGGAAAATTTGCTAGAGCTTCCAAGAGATATGAGAAGGTGGTCATTCTACTTGCAATTTCAAAAAGTTTCTTCTTATGCACCTTATATTTAGCTGTGAAGTTCATTGAATACGATTCTTCGTTTAGCGAAGAAGAGAAAAAGCAGGCAAAGGCATTGAAAGTTGCATGCAATTTGAACAATGCAGCTTGTAAATTGAAGCTAAAGCTGTACAACGAGGCAGAGAAATTGTGCACCAAGGTGGGCATGTACCTTTCCTCCTTTTCTTCAATGCTCAATACTCAGTTGCTTGTAGATTCTTCTAAGTCAAGTGATATTGTTGATACCATCAGGGATGTGAAATTGGAATACAAAACTCTGAAGGAGAAGGTGAAAGAATACAATAAAAAGGATGCCAAGTTTTACGGCAACATGTTTGCCAAAATGAAGAAAGTAGAATCTGCCTAA 1746 41.35 MDEDFDIPAAADMNEDLDLPDETVAFKVGEEKEIGNQGLKKKLLKEGEGWVTPENGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGTLVTWAFYLVYMTCYELHIQKGTSVALRGSFLQICTLRWQVIKGWDLGIKTMKKNEKALFTIPPDLAYGESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGDKWDNPKDLDEVLGNKAHLKTGYFCPALAKAIKTMKIGEKALLTVKPQYGFGEKGKSASSNEGAVPPNASLDITLELVSWKTVSEVTPDKKIIKKILKEGEGYEKPNDGAIVKVKLIGKLGDGKIFLKKGYDDGEEPFEFKTDEEQVIDGLDKAVATMKKGETALLTIAPEYAFGSSESQQDLAVVPPNSTVYYEVELVAFDKEKESWDMNNQEKIEAAGKKKEEGNVLFKSGKFARASKRYEKVVILLAISKSFFLCTLYLAVKFIEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKLYNEAEKLCTKVGMYLSSFSSMLNTQLLVDSSKSSDIVDTIRDVKLEYKTLKEKVKEYNKKDAKFYGNMFAKMKKVESA 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27673991 27678607 - Lsi02G021350.1 Lsi02g02135 656877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02135 581 PANTHER PEPTIDYLPROLYL ISOMERASE 403 580 - -
Lsi02g02135 581 PANTHER PEPTIDYLPROLYL ISOMERASE 118 290 - -
Lsi02g02135 581 PANTHER PEPTIDYLPROLYL ISOMERASE 1 93 - -
Lsi02g02135 581 PANTHER PEPTIDYLPROLYL ISOMERASE 293 402 - -
Lsi02g02135 581 SUPERFAMILY FKBP-like 287 421 - -
Lsi02g02135 581 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 56 183 IPR001179 GO:0003755
Lsi02g02135 581 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 195 283 IPR001179 GO:0003755
Lsi02g02135 581 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 51 180 IPR001179 GO:0003755
Lsi02g02135 581 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 305 401 IPR001179 GO:0003755
Lsi02g02135 581 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 220 279 IPR001179 GO:0003755
Lsi02g02135 581 SUPERFAMILY FKBP-like 187 286 - -
Lsi02g02135 581 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 311 404 IPR001179 GO:0003755
Lsi02g02135 581 Gene3D - 285 405 IPR046357 GO:0003755
Lsi02g02135 581 SUPERFAMILY FKBP-like 35 182 - -
Lsi02g02135 581 SUPERFAMILY TPR-like 409 514 IPR011990 GO:0005515
Lsi02g02135 581 Gene3D Tetratricopeptide repeat domain 407 520 IPR011990 GO:0005515
Lsi02g02135 581 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 118 290 - -
Lsi02g02135 581 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 403 580 - -
Lsi02g02135 581 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 93 - -
Lsi02g02135 581 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 293 402 - -
Lsi02g02135 581 Gene3D - 188 284 IPR046357 GO:0003755
Lsi02g02135 581 Coils Coil 543 563 - -
Lsi02g02135 581 Gene3D - 31 187 IPR046357 GO:0003755
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02135 Lsi-Chr2:27673991 Lsi05g01354 Lsi-Chr5:21432590 0 dispersed
Lsi02g02135 Lsi-Chr2:27673991 Lsi02g02136 Lsi-Chr2:27679349 1.18E-18 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02135 K09571 - csv:101214513 837.41