Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi02g02171 | ATGATCCTATATGAGAATATACTTGTCGCAGCTGATCTTATTTCAGAAGCATTGTCATCCGTAACCCATCGTGCAATGGCTATTATGGCTTCCAATGGACGTATTTCAGGCTCTGCAGTGGTAGTATATGCTCGGTATCTATTGAAAAAGTATAGCAGCATGCCTAGTGTCGTTGAATGGGAGAAGAGTTTTAAGGCAACATGTGACAAGAGACTTATTGCTGAACTTGATCCAGGGAGTACATTGGATGGAGAGTTGGGGCTTCCACTTGGAGTTCCTGCAGGTAGCAAAAATAGCCACAAGAACTCCGCCCGAAAATGGCGGAAATGGAGAATTCAAGATTACTACCGCCACAAACCATGCAACACGAGGAACGAAGCTCAAACACAGAGACAGAGAAAACCAAACTTCTGGGTTTACTCAAGGATTTTCCCCCCTCAAGCAATTCAAGCTTCCGCCGGACAATTTTTGATCCTCTTATTGTTTTTGCATACAGAATCAAATGGTTATGTTCGTGTAGCTGCATTTCGGAAATTCATATTAGGAGTCGGAATGGACAAGCCTGTCAATATTGTTGTTGGTTCTCAAATATGGGTGGGAGATATAGATTCTGTTTGGATTGATGGACTTGTATTGAACATCACTGGGGAAGATGCTGAGATTCAAACTAGTGATGGGAGACAGATTAAACAAGAGTCGTATAAGAAATTCAGTTATCGAGAGGCCTGCAGAAAAAACAAACAAGATAAGGCAAAAAATGCACCGTTAAAGTTGAAAAAGGTTGTGGAGCCGAGCCATCAGAAAGAACTGGTGGTTGTAAAAATGTCAAATCTATATCCAAGGGACGCTGAAGCTCCTGCTACTGGAATTGACGATATGACTAGAATGTCATATTTGAATGAGCCCGGGTTGCTGCATAATTTGGCTATCAGATATGCAATAAATGAAATCTATACTTATACTGGAAACATTCTTATTGCCATCAACCCATTCCAAAGTATTTCAAGTCTGTATGATGCCCATGTGATGGAGCAGTACAAGGGAACAACAATTGGGGAGCTGAAGCCTCATGTTTTTGCAATTGCTGATGTTGCATATAGGGCTATGATAAATTGTGGAAAAAGCAACTCCATTCTGGTAAGTGGTGAAAGTGGGGCTGGTAAGACCGAAACCACCAAAATGCTTATGTGTTACCTTGCATTTTTGGGCGGCCATGCTGCATCTGAAGGACGGACTGTTGAACAACAAGTTTTAGAATCAAATCCAGTTCTTGAAGCTTTTGGCAATGCAAAAACAGTTAGAAACAATAATTCAAGCCGTTTTGGGAAATTTGTTGAGATCCAATTTGACAAGAAGGGAAGAATATCAGGAGCTGCCATCAGAACTTATCTTCTTGAGAGATCACGGGTTTGCCAAATATCGGACCCTGAGCGCAACTATCATTGCTTTTATCTTCTCTGTGCGGCTCCACCGCAGGAGAGAGAGAGATATAAGCTGGGAAATCCAAAATCATTTCACTATCTAAACCAATCAAATTGTTATGAACTGGCTGGTGTGAATGATGCTCATGATTATCTTGCTACAAAGAGAGCCATGGATATTGTTGGAATAGGTGAACAAGAGCAGCCTACTGCTAAATGCCTCCCCTTTCCTTGCTTCTTCTTTCAGGATGCAATTTTCAGAGTTGTGGCTGCAATTCTCCATCTTGGTAATGTTGACTTTGCAAAAGGAGAAGAGTCTGATTCATCATTTGTAAAAGATGAAGAATCAAAATTTCATCTTCACATGACAGCAGAGCTTCTCATGTGTGACTGGAGCTTTGCTTTTATTACTTTGTGTGATCCACTTGCATTAGAAGATGCTCTTTGCAAGCGCATGATGATTACACCGGAGGACGTCATCAAGAGAAGTCTTGATCCGCTTGGTGCAACAGTTAGCAGGGATGGATTAGCCAAGACAATATACTCTCGTTTGTTTGACTGGTTGGTAGATAAAATCAATTTTTCCATCGGACAAGATCCTGGCTCGAAATATCTGATCGGAGTACTTGATATTTATGGTTTTGAGAGCTTTCAAACAAATAGTTTTGAGCAATTCTGCATTAATTACACAAATGAAAAGCTGCAGCAACATTTCAACCAGCACGTCTTCAAGATGGAGCAAGAAGAATACGTAAAAGAGGAAATTGATTGGAGCTACATAGAATTTGTTGATAATCAAGATGTCCTCGATCTCATTGAGAAGTTTCTAGACAAAAATAAAGATTATGTTGTCCCTGAACATCAAGATTTGTTGAGTGCTTCAAAATGTTCTTTTGTTGCTGGCCTCTTCTCTCCTCATCCTGAGGAGACGGCCAAATCATCAAAGTTTTCTTCAATTGGCTCTCGTTTTAAGTTACAACTGCAGCAGTTGATGGAAACGTTAAATTCAACCGAACCCCATTATATAAGATGTGTGAAGCCCAATACTGTCCTGCAACCTGCCATCTTTGAGAATGCTACTGTTATGCAACAATTACGCTCTGGAGGTGTTTTGGAGGCAATTAGAATCAAATGTGCAGGATACCCTACTCATAGAACATTTTCCGAATTTTTATCACGATTTGGAGTTCTTGCACCCGAGGTATTGGAAGGGGAATATGAAGAGAAAGTAGCGTGCGAAAAGATTCTAGAGAAGATGGGACTTAAAGGTTATCTGATAGGGAAATCAAAAATTTTCCTAAGAGGTCATTTGATGGCTGAACTAGATGCACAAAGAACAGGAATATATAGTGCCGCTGCTATAGTTATACAGAAGCATTTCAGAGCTCGAATTGATCGTAAAAAGTACATTGCCATGCGAAGAGCTTGCATTCGTCTACAATCATATTGGAGAGGTGTTCTTGCCCGTGAGTCATATGAAATTAGGAGAAGGGAAGCAGCCGCCGTCAAAATTCAAAAGAATTTTCGTGCATACCTTGCCAGGAGCCTTCATGTTAGAACAAGGATCTCTACAGTTGTTCTTCAGGCTGGTATGCGTGCAATGGTTGCTCGGAGTGAATACAGACATAGGAGGCAGGTTAAGGCTGCAAAAGTTATTCAATCTTATTGGCGTCAGTATAGAACCTCGTCGAGGTATAAGACAGTTAAAAAATCATCAACCAATTCACAATGCGGATCGTACTCAAAAACTTCTGGTGAAGGTCTTAAGAAGCAAAGGATGGCCAACTTGGAAGAAACAGCGGAGGATCTGGTTTTGCCTGCGTTGCTCAACAGCAGTACAGACACCATTGATGAAACAATTGAAATGATTGCCATGGAAAGCCGTGTTTCTCCACAAGAAATAGAAAAAGCATACTTTATTATTAAAGAGCCCGGTAGTCCAGTTAAAGATGCAGATAAAGTGGTCACTCTCAGAGCAGAAATGGCCAATCTAAAGGCAGAGCAGTTGTTGACTCCTGAGATGGAAGAGAATGAAATGGCTGTAGATGAAGGATTACTTTCAAGAAAGATGGATTCAAAATATCTTTTGTTTTCTATTACAAGTTTTTGTTTTCTTTCCTCAAATTCCAAAATGACTAAAGGTGGAAGAACACATTTACGTGAACAGGCCATGTTGCAGGCTGAAAGGCAAAGAGCAAATGAGTATGAAAGGAAGTATGTTGCAACGCAGAAAGCAAATGAGGAAGGACGTAAAAAACTAAAAGAAACCCAAAGGAAGGTGCATCAACTTCAGGACTACATAAACAGGATGATACATTGCATGTCAAACCAAATCTCGGAGATGAAAATGATCGTGGGTACTTCTAGATCAGATGCATCTAGTTCTTTTCCGAATGAGGTTCTGACAGATGCCACATCTAGTTGCTCTGATTCATCATCAGAAGACTTCACCTTTCCTGTTCCAAGTCCATCTATGCCAACTTTCTCTTCATTTGGTACCAACACTTTTCAGCTGATTGTGCAGGATATTTCAGCTGCAGAAATTCCAGGTACCTCCGCTTTACAACGATGGAGTTATTTCAGCACAAATTAA | 4014 | 40.56 | MILYENILVAADLISEALSSVTHRAMAIMASNGRISGSAVVVYARYLLKKYSSMPSVVEWEKSFKATCDKRLIAELDPGSTLDGELGLPLGVPAGSKNSHKNSARKWRKWRIQDYYRHKPCNTRNEAQTQRQRKPNFWVYSRIFPPQAIQASAGQFLILLLFLHTESNGYVRVAAFRKFILGVGMDKPVNIVVGSQIWVGDIDSVWIDGLVLNITGEDAEIQTSDGRQIKQESYKKFSYREACRKNKQDKAKNAPLKLKKVVEPSHQKELVVVKMSNLYPRDAEAPATGIDDMTRMSYLNEPGLLHNLAIRYAINEIYTYTGNILIAINPFQSISSLYDAHVMEQYKGTTIGELKPHVFAIADVAYRAMINCGKSNSILVSGESGAGKTETTKMLMCYLAFLGGHAASEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKKGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPPQERERYKLGNPKSFHYLNQSNCYELAGVNDAHDYLATKRAMDIVGIGEQEQPTAKCLPFPCFFFQDAIFRVVAAILHLGNVDFAKGEESDSSFVKDEESKFHLHMTAELLMCDWSFAFITLCDPLALEDALCKRMMITPEDVIKRSLDPLGATVSRDGLAKTIYSRLFDWLVDKINFSIGQDPGSKYLIGVLDIYGFESFQTNSFEQFCINYTNEKLQQHFNQHVFKMEQEEYVKEEIDWSYIEFVDNQDVLDLIEKFLDKNKDYVVPEHQDLLSASKCSFVAGLFSPHPEETAKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNTVLQPAIFENATVMQQLRSGGVLEAIRIKCAGYPTHRTFSEFLSRFGVLAPEVLEGEYEEKVACEKILEKMGLKGYLIGKSKIFLRGHLMAELDAQRTGIYSAAAIVIQKHFRARIDRKKYIAMRRACIRLQSYWRGVLARESYEIRRREAAAVKIQKNFRAYLARSLHVRTRISTVVLQAGMRAMVARSEYRHRRQVKAAKVIQSYWRQYRTSSRYKTVKKSSTNSQCGSYSKTSGEGLKKQRMANLEETAEDLVLPALLNSSTDTIDETIEMIAMESRVSPQEIEKAYFIIKEPGSPVKDADKVVTLRAEMANLKAEQLLTPEMEENEMAVDEGLLSRKMDSKYLLFSITSFCFLSSNSKMTKGGRTHLREQAMLQAERQRANEYERKYVATQKANEEGRKKLKETQRKVHQLQDYINRMIHCMSNQISEMKMIVGTSRSDASSSFPNEVLTDATSSCSDSSSEDFTFPVPSPSMPTFSSFGTNTFQLIVQDISAAEIPGTSALQRWSYFSTN | 1337 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 28193940 | 28218933 | + | Lsi02G021710.1 | Lsi02g02171 | 656913 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi02g02171 | 1337 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 555 | 695 | - | - | |
| Lsi02g02171 | 1337 | ProSiteProfiles | IQ motif profile. | 1019 | 1048 | IPR000048 | GO:0005515 | |
| Lsi02g02171 | 1337 | Pfam | Myosin head (motor domain) | 291 | 748 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi02g02171 | 1337 | Gene3D | - | 696 | 747 | - | - | |
| Lsi02g02171 | 1337 | PRINTS | Myosin heavy chain signature | 318 | 337 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi02g02171 | 1337 | PRINTS | Myosin heavy chain signature | 422 | 449 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi02g02171 | 1337 | PRINTS | Myosin heavy chain signature | 732 | 760 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi02g02171 | 1337 | PRINTS | Myosin heavy chain signature | 679 | 707 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi02g02171 | 1337 | PRINTS | Myosin heavy chain signature | 375 | 400 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi02g02171 | 1337 | Gene3D | - | 748 | 811 | - | - | |
| Lsi02g02171 | 1337 | ProSiteProfiles | IQ motif profile. | 994 | 1023 | IPR000048 | GO:0005515 | |
| Lsi02g02171 | 1337 | PANTHER | MYOSIN | 747 | 1317 | - | - | |
| Lsi02g02171 | 1337 | SMART | MYSc_2a | 282 | 921 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi02g02171 | 1337 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 756 | 789 | - | - | |
| Lsi02g02171 | 1337 | ProSiteProfiles | IQ motif profile. | 923 | 949 | IPR000048 | GO:0005515 | |
| Lsi02g02171 | 1337 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 263 | 973 | IPR027417 | - | |
| Lsi02g02171 | 1337 | Gene3D | - | 855 | 921 | - | - | |
| Lsi02g02171 | 1337 | PANTHER | MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN | 747 | 1317 | - | - | |
| Lsi02g02171 | 1337 | PANTHER | MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN | 189 | 237 | - | - | |
| Lsi02g02171 | 1337 | Gene3D | - | 923 | 972 | - | - | |
| Lsi02g02171 | 1337 | Gene3D | - | 973 | 1024 | - | - | |
| Lsi02g02171 | 1337 | CDD | MYSc_Myo11 | 302 | 908 | IPR036018 | - | |
| Lsi02g02171 | 1337 | Gene3D | Kinesin motor domain | 812 | 850 | IPR036961 | - | |
| Lsi02g02171 | 1337 | Coils | Coil | 1192 | 1240 | - | - | |
| Lsi02g02171 | 1337 | PANTHER | MYOSIN | 267 | 749 | - | - | |
| Lsi02g02171 | 1337 | PANTHER | MYOSIN | 189 | 237 | - | - | |
| Lsi02g02171 | 1337 | ProSiteProfiles | Myosin motor domain profile. | 288 | 920 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lsi02g02171 | 1337 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 973 | 1043 | IPR027417 | - | |
| Lsi02g02171 | 1337 | ProSiteProfiles | IQ motif profile. | 946 | 975 | IPR000048 | GO:0005515 | |
| Lsi02g02171 | 1337 | Gene3D | Kinesin motor domain | 250 | 549 | IPR036961 | - | |
| Lsi02g02171 | 1337 | ProSiteProfiles | IQ motif profile. | 971 | 998 | IPR000048 | GO:0005515 | |
| Lsi02g02171 | 1337 | PANTHER | MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN | 267 | 749 | - | - | |
| Lsi02g02171 | 1337 | SMART | iq_5 | 945 | 967 | IPR000048 | GO:0005515 | |
| Lsi02g02171 | 1337 | SMART | iq_5 | 922 | 944 | IPR000048 | GO:0005515 | |
| Lsi02g02171 | 1337 | SMART | iq_5 | 970 | 992 | IPR000048 | GO:0005515 | |
| Lsi02g02171 | 1337 | SMART | iq_5 | 1018 | 1040 | IPR000048 | GO:0005515 | |
| Lsi02g02171 | 1337 | SMART | iq_5 | 993 | 1015 | IPR000048 | GO:0005515 | |
| Lsi02g02171 | 1337 | Pfam | IQ calmodulin-binding motif | 973 | 989 | IPR000048 | GO:0005515 | |
| Lsi02g02171 | 1337 | Pfam | IQ calmodulin-binding motif | 925 | 943 | IPR000048 | GO:0005515 | |
| Lsi02g02171 | 1337 | Pfam | IQ calmodulin-binding motif | 947 | 966 | IPR000048 | GO:0005515 | |
| Lsi02g02171 | 1337 | Pfam | IQ calmodulin-binding motif | 1021 | 1040 | IPR000048 | GO:0005515 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g02171 | Lsi-Chr2:28193940 | Lsi11g00416 | Lsi-Chr11:4374341 | 0 | dispersed | |
| Lsi02g02171 | Lsi-Chr2:28193940 | Lsi05g01786 | Lsi-Chr5:25176357 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi02g02171 | K10357 | - | pda:103704019 | 1192.18 |