Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02174 ATGGCAGCCTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTCCATGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCACCACGAGCTCGGCGCCTCTCACTTCTCCGCCATCCACAAGGTTTTCGGTGCAAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCGATCTCCCACCGTTTCGAAGCGGCGGTGACGATCTCGTACGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGCGTATCTCATATTTTCGCTCTCCAGCAACAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCTCAAATCCTTCTCAACAACTACAATACAAGAAACCCTATTGAATTACCTTACGAAAGTTCTCCATTTTATTCCGACGACCCATTACAAGATCTTCAAAGTTGGCTTCTGGCGGAGAGCTGCAGCGCCGCCGCACCGGAGTTTGAACCTACGGCGGTGCCGTACTTTGAGATGAGCGTCGTCGATTCAAATCTCGCCGGAGATTTCTGTTGCTAA 561 48.84 MAASSSSSSSSSPPCGACKFLRRKCVNGCIFAPYFHHELGASHFSAIHKVFGASNASKLLAHLPISHRFEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYNTRNPIELPYESSPFYSDDPLQDLQSWLLAESCSAAAPEFEPTAVPYFEMSVVDSNLAGDFCC 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28249775 28250557 + Lsi02G021740.1 Lsi02g02174 656916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02174 186 Coils Coil 94 114 - -
Lsi02g02174 186 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Lsi02g02174 186 ProSiteProfiles LOB domain profile. 13 115 IPR004883 -
Lsi02g02174 186 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 140 - -
Lsi02g02174 186 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 10 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02174 Lsi-Chr2:28249775 Lsi05g01004 Lsi-Chr5:17507404 2.50E-62 dispersed
Lsi02g02174 Lsi-Chr2:28249775 Lsi09g01900 Lsi-Chr9:27833481 1.74E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24883 PF03195 LOB 3.10E-34 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02174 K13945 - csv:101220863 332.028