Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g02182 | ATGGATTCGGCGAGGAGTTGGTTTAATAAGCTTCAGCCAAGAGATAGGCTGAGGGGTTCTACGAAGAAGAAGGATAATAGTATGGGAGAGAATGAGGATTGTCCTGCTACTGATCAGCAAATGGATGAAGAAGCGCTTTCTAATATCACTAAGCAGAAGGTTGCTGCGGCAAAGCAGTATATTGAGAATCATTACAAGGAGCAAATGAAGAATCTGCAGGAGAGAAGGGACAGGAACCAATTGTTGAATCCTTTGATTTACAATGCTAAGTTTTATTCTTACTTCTTGAGACTATCAGAACTGATCAATGTTAATGACTTTTGGGAACGAAATATATTGGAAAAGAAGTTGGCTGATGCTGATGTTTCTGAAGAAGATCAAAACAATTTACTTAAGTTCTTAGAGAAGAAGGAAACTGAATACATGCGCCTCCAAAGGCACAAAATGGGTGTCGATGATTTCGATTTACTAACAATTATTGGCAAAGGTGCTTTTGGGGAGGTTCGTGTTTGTAGAGAGAAGACTACAGGTCAGGTGTACGCTATGAAAAAGCTTAAAAAATCAGAGATGCTTCGAAGGGGCCAGGTGGAGCATGTGAGAGCTGAAAGAAATCTGCTTGCTGAAGTAGACAGCAATTGCATTGTGAAACTCTATTGTTCTTTTCAAGATGATGAGTTTCTTTATCTTATTATGGAGTACCTACCTGGTGGAGATATGATGACTTTATTGATGAGAAAGGATACTTTGACTGAAGATGAAGCAAGGTTTTACGTTGGAGAGATAGTTTTGGCTATTGAATCTATTCACAAGCACAATTACATTCATAGAGATATTAAGCCTGACAACTTGCTGCTTGATAAATTCGGGCACCTGAGACTCTCAGACTTTGGACTATGCAAACCATTAGATTGCAGTACACTCCAAGAACAAGATTTTGATGTAGGGAGTGCCCGTAATGGAGCTGGACAAAGTGATGAGCGCAATGCAGCTCCCCGTACTCAACAAGAGCAACTACAACATTGGCAGAAGAATCGAAGAATGCTTGCTTATTCAACAGTTGGAACACCAGATTATATTGCTCCAGAGGTTTTGTTGAAGAAAGGTTATGGCATGGAATGTGACTGGTGGTCGCTTGGAGCTATTATGTATGAAATGCTTGTTGGCTACCCACCTTTTTACTCTGATGATCCAATGTCTACATGTCGGAAGATAGTGAACTGGAGAACTCATTTGAAGTTCCCTGACGAGGCAAAGCTATCTCCCTTGGCAAAAGATCTCATCAGCAAACTGCTATGCAATGTTAACCAGAGGCTCGGTACAAATGGCGCGGATGAAATTAAGGTTCATCCGTGGTTTGAAGGTACTGAATGGGATAGGCTATACCAAATGGAAGCTGCATTTGTTCCTGAGGTTAAAGATGAGCTAGACACTCAAAATTTTGAAAAGTTTGAAGAGTCTGACTCGCAAAGCAGTACTTCATCTAAAACTGGTCCATGGAGAAAGATGCTTTCATCGAAGGACATCAACTTTGTTGGATATACTTATAAGAACTTTGAAATTGTCAATGATTATCAATTACCTGGGATGGATGGCGAGTCGGAGGCAGCAGACGCATCTGATACACATACACCTAGTCATAGTCAGCAGAACACTGAAGGTAGCTTTTCGAACTCAATGACATCTCCTAAACTGGATGAAGTTGAAATGGGGAAAGAGTCGATGTAA | 1725 | 40.7 | MDSARSWFNKLQPRDRLRGSTKKKDNSMGENEDCPATDQQMDEEALSNITKQKVAAAKQYIENHYKEQMKNLQERRDRNQLLNPLIYNAKFYSYFLRLSELINVNDFWERNILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFDLLTIIGKGAFGEVRVCREKTTGQVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEFLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGEIVLAIESIHKHNYIHRDIKPDNLLLDKFGHLRLSDFGLCKPLDCSTLQEQDFDVGSARNGAGQSDERNAAPRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRTHLKFPDEAKLSPLAKDLISKLLCNVNQRLGTNGADEIKVHPWFEGTEWDRLYQMEAAFVPEVKDELDTQNFEKFEESDSQSSTSSKTGPWRKMLSSKDINFVGYTYKNFEIVNDYQLPGMDGESEAADASDTHTPSHSQQNTEGSFSNSMTSPKLDEVEMGKESM | 574 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 28306265 | 28315264 | - | Lsi02G021820.1 | Lsi02g02182 | 656924 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g02182 | 574 | MobiDBLite | consensus disorder prediction | 9 | 31 | - | - | |
Lsi02g02182 | 574 | Gene3D | Transferase(Phosphotransferase) domain 1 | 238 | 304 | - | - | |
Lsi02g02182 | 574 | Gene3D | Transferase(Phosphotransferase) domain 1 | 351 | 470 | - | - | |
Lsi02g02182 | 574 | ProSitePatterns | Protein kinases ATP-binding region signature. | 160 | 183 | IPR017441 | GO:0005524 | |
Lsi02g02182 | 574 | MobiDBLite | consensus disorder prediction | 315 | 338 | - | - | |
Lsi02g02182 | 574 | CDD | STKc_NDR_like | 152 | 516 | - | - | |
Lsi02g02182 | 574 | SMART | pkinase_C_6 | 453 | 517 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Lsi02g02182 | 574 | Pfam | Protein kinase C terminal domain | 471 | 515 | IPR017892 | GO:0004674|GO:0005524|GO:0006468 | |
Lsi02g02182 | 574 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 453 | 525 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Lsi02g02182 | 574 | MobiDBLite | consensus disorder prediction | 529 | 574 | - | - | |
Lsi02g02182 | 574 | Pfam | Protein kinase domain | 156 | 452 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi02g02182 | 574 | MobiDBLite | consensus disorder prediction | 321 | 338 | - | - | |
Lsi02g02182 | 574 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 1 | 82 | - | - | |
Lsi02g02182 | 574 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 110 | 529 | - | - | |
Lsi02g02182 | 574 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 1 | 82 | - | - | |
Lsi02g02182 | 574 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 110 | 529 | - | - | |
Lsi02g02182 | 574 | Gene3D | Phosphorylase Kinase; domain 1 | 471 | 481 | - | - | |
Lsi02g02182 | 574 | Gene3D | Phosphorylase Kinase; domain 1 | 152 | 237 | - | - | |
Lsi02g02182 | 574 | ProSiteProfiles | Protein kinase domain profile. | 154 | 452 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi02g02182 | 574 | MobiDBLite | consensus disorder prediction | 538 | 563 | - | - | |
Lsi02g02182 | 574 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 273 | 285 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi02g02182 | 574 | SUPERFAMILY | Protein kinase-like (PK-like) | 127 | 505 | IPR011009 | - | |
Lsi02g02182 | 574 | SMART | serkin_6 | 154 | 452 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi02g02182 | 574 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g02182 | Lsi-Chr2:28306265 | Lsi09g01229 | Lsi-Chr9:19708524 | 0 | dispersed | |
Lsi02g02182 | Lsi-Chr2:28306265 | Lsi06g00299 | Lsi-Chr6:3436514 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83423 | PF00069 | Pkinase | 6.20E-64 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g02182 | K08790 | - | csv:101221720 | 998.423 |