Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02182 ATGGATTCGGCGAGGAGTTGGTTTAATAAGCTTCAGCCAAGAGATAGGCTGAGGGGTTCTACGAAGAAGAAGGATAATAGTATGGGAGAGAATGAGGATTGTCCTGCTACTGATCAGCAAATGGATGAAGAAGCGCTTTCTAATATCACTAAGCAGAAGGTTGCTGCGGCAAAGCAGTATATTGAGAATCATTACAAGGAGCAAATGAAGAATCTGCAGGAGAGAAGGGACAGGAACCAATTGTTGAATCCTTTGATTTACAATGCTAAGTTTTATTCTTACTTCTTGAGACTATCAGAACTGATCAATGTTAATGACTTTTGGGAACGAAATATATTGGAAAAGAAGTTGGCTGATGCTGATGTTTCTGAAGAAGATCAAAACAATTTACTTAAGTTCTTAGAGAAGAAGGAAACTGAATACATGCGCCTCCAAAGGCACAAAATGGGTGTCGATGATTTCGATTTACTAACAATTATTGGCAAAGGTGCTTTTGGGGAGGTTCGTGTTTGTAGAGAGAAGACTACAGGTCAGGTGTACGCTATGAAAAAGCTTAAAAAATCAGAGATGCTTCGAAGGGGCCAGGTGGAGCATGTGAGAGCTGAAAGAAATCTGCTTGCTGAAGTAGACAGCAATTGCATTGTGAAACTCTATTGTTCTTTTCAAGATGATGAGTTTCTTTATCTTATTATGGAGTACCTACCTGGTGGAGATATGATGACTTTATTGATGAGAAAGGATACTTTGACTGAAGATGAAGCAAGGTTTTACGTTGGAGAGATAGTTTTGGCTATTGAATCTATTCACAAGCACAATTACATTCATAGAGATATTAAGCCTGACAACTTGCTGCTTGATAAATTCGGGCACCTGAGACTCTCAGACTTTGGACTATGCAAACCATTAGATTGCAGTACACTCCAAGAACAAGATTTTGATGTAGGGAGTGCCCGTAATGGAGCTGGACAAAGTGATGAGCGCAATGCAGCTCCCCGTACTCAACAAGAGCAACTACAACATTGGCAGAAGAATCGAAGAATGCTTGCTTATTCAACAGTTGGAACACCAGATTATATTGCTCCAGAGGTTTTGTTGAAGAAAGGTTATGGCATGGAATGTGACTGGTGGTCGCTTGGAGCTATTATGTATGAAATGCTTGTTGGCTACCCACCTTTTTACTCTGATGATCCAATGTCTACATGTCGGAAGATAGTGAACTGGAGAACTCATTTGAAGTTCCCTGACGAGGCAAAGCTATCTCCCTTGGCAAAAGATCTCATCAGCAAACTGCTATGCAATGTTAACCAGAGGCTCGGTACAAATGGCGCGGATGAAATTAAGGTTCATCCGTGGTTTGAAGGTACTGAATGGGATAGGCTATACCAAATGGAAGCTGCATTTGTTCCTGAGGTTAAAGATGAGCTAGACACTCAAAATTTTGAAAAGTTTGAAGAGTCTGACTCGCAAAGCAGTACTTCATCTAAAACTGGTCCATGGAGAAAGATGCTTTCATCGAAGGACATCAACTTTGTTGGATATACTTATAAGAACTTTGAAATTGTCAATGATTATCAATTACCTGGGATGGATGGCGAGTCGGAGGCAGCAGACGCATCTGATACACATACACCTAGTCATAGTCAGCAGAACACTGAAGGTAGCTTTTCGAACTCAATGACATCTCCTAAACTGGATGAAGTTGAAATGGGGAAAGAGTCGATGTAA 1725 40.7 MDSARSWFNKLQPRDRLRGSTKKKDNSMGENEDCPATDQQMDEEALSNITKQKVAAAKQYIENHYKEQMKNLQERRDRNQLLNPLIYNAKFYSYFLRLSELINVNDFWERNILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFDLLTIIGKGAFGEVRVCREKTTGQVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEFLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGEIVLAIESIHKHNYIHRDIKPDNLLLDKFGHLRLSDFGLCKPLDCSTLQEQDFDVGSARNGAGQSDERNAAPRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRTHLKFPDEAKLSPLAKDLISKLLCNVNQRLGTNGADEIKVHPWFEGTEWDRLYQMEAAFVPEVKDELDTQNFEKFEESDSQSSTSSKTGPWRKMLSSKDINFVGYTYKNFEIVNDYQLPGMDGESEAADASDTHTPSHSQQNTEGSFSNSMTSPKLDEVEMGKESM 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28306265 28315264 - Lsi02G021820.1 Lsi02g02182 656924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02182 574 MobiDBLite consensus disorder prediction 9 31 - -
Lsi02g02182 574 Gene3D Transferase(Phosphotransferase) domain 1 238 304 - -
Lsi02g02182 574 Gene3D Transferase(Phosphotransferase) domain 1 351 470 - -
Lsi02g02182 574 ProSitePatterns Protein kinases ATP-binding region signature. 160 183 IPR017441 GO:0005524
Lsi02g02182 574 MobiDBLite consensus disorder prediction 315 338 - -
Lsi02g02182 574 CDD STKc_NDR_like 152 516 - -
Lsi02g02182 574 SMART pkinase_C_6 453 517 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lsi02g02182 574 Pfam Protein kinase C terminal domain 471 515 IPR017892 GO:0004674|GO:0005524|GO:0006468
Lsi02g02182 574 ProSiteProfiles AGC-kinase C-terminal domain profile. 453 525 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lsi02g02182 574 MobiDBLite consensus disorder prediction 529 574 - -
Lsi02g02182 574 Pfam Protein kinase domain 156 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02182 574 MobiDBLite consensus disorder prediction 321 338 - -
Lsi02g02182 574 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 82 - -
Lsi02g02182 574 PANTHER SERINE/THREONINE-PROTEIN KINASE 110 529 - -
Lsi02g02182 574 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 82 - -
Lsi02g02182 574 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 110 529 - -
Lsi02g02182 574 Gene3D Phosphorylase Kinase; domain 1 471 481 - -
Lsi02g02182 574 Gene3D Phosphorylase Kinase; domain 1 152 237 - -
Lsi02g02182 574 ProSiteProfiles Protein kinase domain profile. 154 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02182 574 MobiDBLite consensus disorder prediction 538 563 - -
Lsi02g02182 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Lsi02g02182 574 SUPERFAMILY Protein kinase-like (PK-like) 127 505 IPR011009 -
Lsi02g02182 574 SMART serkin_6 154 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02182 574 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02182 Lsi-Chr2:28306265 Lsi09g01229 Lsi-Chr9:19708524 0 dispersed
Lsi02g02182 Lsi-Chr2:28306265 Lsi06g00299 Lsi-Chr6:3436514 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83423 PF00069 Pkinase 6.20E-64 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02182 K08790 - csv:101221720 998.423