Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02215 ATGTCAATTGTTACTGATTTGTTTGGTAATAATTACCAAGAAAATTTCTTGTGGAACAATAATCACAACCAGAGTTTCATTTCCGGGGAAGACAATTCTCACCAACTCTCATTTGATCACTTCAAGTACTTGAAACAGATATTGTTTGATGATATGTTTGTGGACACGGTGGAAGGAACGACGTCGTCGGATTCGAGTTCTTGCTCATCTCCGGTGGTGATGCAAGTTAAGGAGGAGATGGAGGAAGGGAGTTTTAGCGACGGCGTCGTTGTGCAGGAAGATCATAAGGAGGAGAGAGTTTATCGAGGGGTGCGGAGGAGGCCGTGGGGGAAATACGCAGCCGAGATTAGGGATTCGACGCGACAAGGGGTGAGAGTGTGGTTGGGGACGTTTGATAGTGCCGAGGCGGCTGCGTTGGCATATGACCAAGCTGCATTTTGCATGAGAGGAGGGCTAGCCACACTTAACTTTCCGGTCGAGGTTGTTAGAGAATCGCTTCGAGAGATGAAGTACCGGTGGGAGGCTGGGTGCTCGCCGGTCTTGGCGCTTAAGCGGCGGCACTCGATACGGAGGAAGAAGATGGCTGAGGTGGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAGCAAAGTGTAGTTGTTTTTGAGGATTTGGGTGTTGAGTACTTAGAAGAACTCTTAAGTTTGACTTCTTAA 693 47.76 MSIVTDLFGNNYQENFLWNNNHNQSFISGEDNSHQLSFDHFKYLKQILFDDMFVDTVEGTTSSDSSSCSSPVVMQVKEEMEEGSFSDGVVVQEDHKEERVYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGGLATLNFPVEVVRESLREMKYRWEAGCSPVLALKRRHSIRRKKMAEVEKMEKKMKKKKQSVVVFEDLGVEYLEELLSLTS 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28581082 28581774 - Lsi02G022150.1 Lsi02g02215 656957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02215 230 Gene3D AP2/ERF domain 100 161 IPR036955 GO:0003700|GO:0006355
Lsi02g02215 230 PANTHER DNA-BINDING DOMAIN 33 228 IPR044808 GO:0003700|GO:0009873
Lsi02g02215 230 Coils Coil 190 210 - -
Lsi02g02215 230 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 33 228 - -
Lsi02g02215 230 SUPERFAMILY DNA-binding domain 100 160 IPR016177 GO:0003677
Lsi02g02215 230 SMART rav1_2 100 164 IPR001471 GO:0003700|GO:0006355
Lsi02g02215 230 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Lsi02g02215 230 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Lsi02g02215 230 Pfam AP2 domain 100 150 IPR001471 GO:0003700|GO:0006355
Lsi02g02215 230 ProSiteProfiles AP2/ERF domain profile. 100 158 IPR001471 GO:0003700|GO:0006355
Lsi02g02215 230 CDD AP2 101 159 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g02215 Lsi05g01011 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02215 Lsi-Chr2:28581082 Lsi05g01011 Lsi-Chr5:17588315 3.64E-61 dispersed
Lsi02g02215 Lsi-Chr2:28581082 Lsi02g02216 Lsi-Chr2:28601499 1.48E-27 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24887 PF00847 AP2 4.50E-15 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02215 K14516 - csv:101205053 315.849