Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02233 ATGATGGAAGAGGTTGAAGAAGCTAATAGGGAAGCTGTTGAGAGTTGTCATAAAGTGTTGAATCTGTTGACTGTGGCTTCCTCGTCTCAAGATCAGTTGAAGCTTAGGAGTTGTTTAATGGCGGAAACTGGAGAGGCTGTGTTTAAGTTTAGGAAAGTTTTGTGTCTTCTTGATTCTTCTGGGTTGGGTCATGCAAGGGTCAGGAAAAAGAAGGTCAAGAACTTTTTGTTTAATTCCTCTTCTTCCACTTTTCCTCTTCCTCAATCTATGTTCTTAGAAACTTCTTCCCCTAATTGCAGAATGGACCTTCTCCAGGGCAGGAATTTGCAGATGGGTCCTCTTTGTTTGGGGAACCCATCTTTGGAATTGAACTCAAATGCCAAAAGTTGTTCAATCCAACAAATACAATCTCAATCTGCTGCTCTTTATCATCATCATCATCATCATCATCACTTGCTTCAGAACAGGGTGTTGTTGAACAATAATCCTAATCCTAATCCTAATCCTAATCCTCCACAGCCTGAAATGGTGTATCTTAGGAGCAATAATGGCATTAACTTGAATTTTGATAGCTCTAGCTGCACACAACACACAATGTCATCCACTAGGTCGTTTATTTCTTCCTTGAGCATTGATGGGAGTGTGGCTAACTTGGATGGGAGTGCCTTTCATTTGATCGGGGCGCCCCGGTCTTCCGATCAGAATTCGCATCATAAGAGGAAGTGCAGTGGGAGAGGGGAAGATGGGAGTGTTAAATGTGGAAGCAGTGGGAGATGTCACTGCTCAAAAAAGAGGAAACATAGAGTAAAGCGATCGATTAAGGTGCCCGCCATAAGTAACAAGCTTGCAGATATCCCTCCTGATAATTATTCATGGAGAAAATATGGCCAAAAGCCAATCAAGGGTTCTCCTCATCCAAGAGGATACTATAAGTGCAGCAGCATGAGAGGCTGTCCAGCAAGGAAGCACGTCGAGCGGTGTCTTGAGGAACCTTCAATGCTCATTGTTACATATGAAGCGGAACGGCGACAAGCGTCCCGAGTGTCGCTGTACATATGGAATACTTTTGGAGCAGCTTTGTAG 1083 43.49 MMEEVEEANREAVESCHKVLNLLTVASSSQDQLKLRSCLMAETGEAVFKFRKVLCLLDSSGLGHARVRKKKVKNFLFNSSSSTFPLPQSMFLETSSPNCRMDLLQGRNLQMGPLCLGNPSLELNSNAKSCSIQQIQSQSAALYHHHHHHHHLLQNRVLLNNNPNPNPNPNPPQPEMVYLRSNNGINLNFDSSSCTQHTMSSTRSFISSLSIDGSVANLDGSAFHLIGAPRSSDQNSHHKRKCSGRGEDGSVKCGSSGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDNYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEAERRQASRVSLYIWNTFGAAL 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28762750 28765166 + Lsi02G022330.1 Lsi02g02233 656975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02233 360 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 3 344 - -
Lsi02g02233 360 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 3 344 IPR044810 GO:0003700
Lsi02g02233 360 Pfam Plant zinc cluster domain 239 284 IPR018872 -
Lsi02g02233 360 Pfam WRKY DNA -binding domain 288 341 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi02g02233 360 ProSiteProfiles WRKY domain profile. 281 347 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi02g02233 360 SUPERFAMILY WRKY DNA-binding domain 284 340 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi02g02233 360 SMART WRKY_cls 286 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi02g02233 360 MobiDBLite consensus disorder prediction 227 250 - -
Lsi02g02233 360 Gene3D WRKY domain 265 339 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi02g02233 360 MobiDBLite consensus disorder prediction 233 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02233 Lsi-Chr2:28762750 Lsi04g01528 Lsi-Chr4:22895393 1.36E-55 dispersed
Lsi02g02233 Lsi-Chr2:28762750 Lsi05g00976 Lsi-Chr5:17003245 2.72E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24890 PF03106 WRKY 2.70E-22 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02233 - - csv:101216822 573.933