Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02245 ATGGCGAACAATCATTCCGATACTCCGGCCGATGATTTCCTCGAGCAGATTCTTGGGATTTCCCCTTTTGGTTCGTCGGACCAAGGGTTAGCTGGAACTGACGGCGGATTGGCCGGAGCTGCTGCTGCTGCTGCTGCGGCAGCAGCGGCGGCTCAGGGTCAGGCTCCGATGATGCTCCAGCTTAGCTCCGGCGACGGTGGTGGCCATATCACTACGATTGGGAGTGGAAGTGTCGGTGGAGCTGGGTTTCATGGAGGACCCCCTTTTCCTCTGGGGTTGAGCTTGGACCAAGGCAAGAGTGGGTTTCTTAAAGCTGAGGAAGCTTCTGGAAGTGGAAAGCGGTATTGTGGCGAGGTTGTTGATGTTCGAGCTTCGTCTGTTAAAAATGTTTTTCAAGGCCAACAAATGCATGCTACTATGGGTGCAGCCCCGCATCCACCGGCTATGCGCCCTAGGGTACGGGCAAGACGTGGACAGGCGACTGATCCACATAGCATTGCAGAGCGGTTACGAAGAGAAAGGATTGCAGAGAGAATTAGGGCATTACAGGATCTTGTTCCGAGTGTCAATAAGACGGATAGAGCTGCAATGCTTGATGAAATAGTGGACTACGTAAAGTTCCTACGTCTCCAAGTTAAGGTTCTGAGCATGAGTAGACTGGGTGGAGCTGGTGCTGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAAGGTGGTAGGAACCAACCGGCATGGGAGAAGTGGTCGAATGATGGTACAGAGAGACAAGTTGCTAAACTTATGGAAGAAAACGTGGGAGCTGCAATGCAATTCCTTCAATCAAAGGCACTCTGCATCATGCCCATCTCGTTGGCTTCAGCGATTTATCACACGCAACCGCCTGATAGCTCGAGCATTGTGAAGCCAGAGAGTAACCCTCCTCCATAG 948 51.79 MANNHSDTPADDFLEQILGISPFGSSDQGLAGTDGGLAGAAAAAAAAAAAAQGQAPMMLQLSSGDGGGHITTIGSGSVGGAGFHGGPPFPLGLSLDQGKSGFLKAEEASGSGKRYCGEVVDVRASSVKNVFQGQQMHATMGAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQDLVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQPPDSSSIVKPESNPPP 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28928685 28932741 - Lsi02G022450.1 Lsi02g02245 656987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02245 315 Gene3D - 154 216 IPR036638 GO:0046983
Lsi02g02245 315 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 303 - -
Lsi02g02245 315 Pfam Helix-loop-helix DNA-binding domain 164 208 IPR011598 GO:0046983
Lsi02g02245 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Lsi02g02245 315 PANTHER TRANSCRIPTION FACTOR UNE12-RELATED 7 303 - -
Lsi02g02245 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 218 IPR036638 GO:0046983
Lsi02g02245 315 SMART finulus 165 214 IPR011598 GO:0046983
Lsi02g02245 315 MobiDBLite consensus disorder prediction 239 258 - -
Lsi02g02245 315 MobiDBLite consensus disorder prediction 140 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02245 Lsi-Chr2:28928685 Lsi06g00191 Lsi-Chr6:2074144 7.96E-99 dispersed
Lsi02g02245 Lsi-Chr2:28928685 Lsi04g01455 Lsi-Chr4:22304152 1.69E-21 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24893 PF00010 HLH 1.30E-07 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02245 - - csv:101218718 475.707