Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g02253 | ATGAGCAAATACGAATCTACTTACCATGAGACGCTTCTCAACATCAGCATAGCTCGAAGGAGATGGAGATTTGCCTATGCAGCAATATATTCAATCCGGGCCATGCTTTCTCTTGCAGTGACCAAAAAAAATGGCCATTACAATTTACTCAACTTTGAGAACTTGCAGGAAGATTCTTATGAGGAACAAATAATCTGCACCAAAGATGATCAGAAGAAGCTGATTGAAATGGTAAAGAACAAAGACAAAGAAGCTTATCATGAGCTTGGAGAAGTTGGAACAATTGCAGCTTCTCTTGGAACGAATCCGGAGAATGGAATCAAGGACAATGGTGAAGTCGTGAATGAACGACGTCAAACATTCGGTACTAACACTTACCACAAGAGGCCTCGGAAGAGTTTCGTTCATTTTGTAGTGGAAGCTTTCAAGGACACCACCATCCTCATTTTACTTGTATGTGCGGCTCTGGCCCTTGGATTTGGAATAAAAGAACATGGAGTTCAAGAAGGATGGTATGAAGGAGGGAGCATATTTGTAGCTGTTGCGTTGGTAGTTGTTGTGTCAGCAATTAGTAACTTCAGACAGGAGCTTGGGGACCAAATTCCAGCTGATGGATTGTTCTTGAGTGGCCATTCTTTGCACGTGGATGAGTCAAGCATGACGGGAGAGAGCGATCACGTGGAACTCAATACAACAGAGAATCCCTTCTTGTTGTCTGGAACAAAAGTAGTAGATGGCTATGGTCAAATGCTGGTGACATCAGTGGGAATGGACACAGCATGGGCACGCTATTTCACTGGAAACACAAAGGATGATTTTGGGAACACTGAGTACAATGGTCGAAAAACAAACATAGATGATGTGCTCAATGCAGTTATTCGTATAGTTGCTGCTGCAGTTACCATAGTAGTGGTTGCAATCCCTGAAGGTTTGCCATTGGCTGTGACACTAACGCTTGCTTACTCTATGAAGAGAATGATGGCAGATCAGGCAATGGTGAGGAAACTGTCGGCTTGTGAAACAATGGGATCGGCAACAGTGATTTGCACGGACAAAACAGGTACTTTGACATTAAACCAAATGAAAGTAACCAAATTCTGGCTTGGCCAAGAGTTTATTGAGGAAGAAAACTCTTCCAATACCATAGCAGAGGCTGTTCATGAGTTGATAAATCAAGGAGTTGGCTTGAACACAACTGGTAGTGTCTATCGTTCTTCACCAGAATCCAAAACTGAAATCTCTGGTAGTCCAACTGAGAAAGCGATTCTATCTTGGGCGGTCACGGACTTTGGTATGGACATGGAGAAGTTGAAGAAGTCATATGCCATTCTTCATGTGGAAACCTTCAACTCAGAGAAGAAAAGAAGTGGGGTTTTGGTGAGAAAATTGGCTGATAACACAATCCATCAGCATTGGAAAGGAGCTGCTGAGATGATACTCTCAATTTGTTCAAGTTACTTTGAAAGAAATGGGAAAACATATCCCTTGGATACTGAGAACCGAATAAAACTTGAGAACATAATCCAAGGAATGGCAGCAAGTAGCCTAAGATGCATTGCCTTTGCTTATAGACAAATCTCAGAAGACGAGGAAAAAAATGGCATACCAAATGCCTCAAACTCGAAAGAAGATGGCTATACATTAATGGGAATAGTTGGCATTAAAGATCCATGTAGGCCAGGGGTGAAGAAAGCCGTGGAAACATGTAAATCAGCTGGAGTTTCCATTAAGATGATCACAGGAGACAACATTTTCACAGCAAAAGCTATAGCCACAGAATGTGGAATACTAGATTTTGATCACAACACAGCAAGCAGAGGCGAAGTAATAGAAGGTTCCGAGTTCCGAAACTACTCAAGTGAAGAGAGACTGCGGAGAGTCGATCAAATCAAGGTTATGGCAAGATCCACTCCATTTGACAAGCTTTTGATGGTTCAATGCTTGAAACAGAAAGGCCATGTCGTAGCAGTAACTGGAGACGGCACAAATGATGCACCGGCTCTAAAAGAAGCTGACATAGGACTTTCCATGGGCATTGAAGGCACCGAGGTTGCAAAAGAGAGTTCAGACATTGTTATCTTGGATGATAACTTCACCACAGTAGCCACAGTCTTGAGGTGGGGAAGATGTGTATATAACAACATCCAAAAATTCATCCAATTTCAATTGACGGTCAATGTCGCAGCTCTTACAATTAACTTTATAGCAGCAGTATCAGCCGGAGAAGTTCCTTTAACAGCAGTCCAATTATTGTGGGTGAATCTCATAATGGATACATTGGGTGCTCTTGCACTTGCTACTGAGAGACCCAATGATGAATTAATGCACAAGCCTCCCGTGGGAAGAACTGAGCCCCTAATAACAAATATCATGTGGAGAAACCTATTAGCTCAAGCTTTATACCAAATAGCAATACTCTTAATTTTCCAGTTCCAAGGAAGCAACATCTTCAACGTAAGTGAAGCGGTAAACGATACACTAATCTTCAACACTTTTGTCCTTTGCCAAATCTTTAATGAGTTCAACTCAAGAAAACTAGAGAAACAGAACGTCTTTGAAGGCATCCTAAAGAATCATTTATTTCTAGGGATTGTGGCAGTAACCGTTGTTCTACAAGTTGTTATGGTAGAATTCCTAAAGAAATTTGCAAACACGGTGAATCTAAATGGTTGGCAGTGGGGACTTTGCATTGCCATTGCAGCGATTTCTTGGCCTATTGGTTGGGTTGTCAAATTCTTACCCGTTTCTAATAAGCCTTTCCTTAGCTACTTCAAATGGTTTTAA | 2784 | 41.63 | MSKYESTYHETLLNISIARRRWRFAYAAIYSIRAMLSLAVTKKNGHYNLLNFENLQEDSYEEQIICTKDDQKKLIEMVKNKDKEAYHELGEVGTIAASLGTNPENGIKDNGEVVNERRQTFGTNTYHKRPRKSFVHFVVEAFKDTTILILLVCAALALGFGIKEHGVQEGWYEGGSIFVAVALVVVVSAISNFRQELGDQIPADGLFLSGHSLHVDESSMTGESDHVELNTTENPFLLSGTKVVDGYGQMLVTSVGMDTAWARYFTGNTKDDFGNTEYNGRKTNIDDVLNAVIRIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRKLSACETMGSATVICTDKTGTLTLNQMKVTKFWLGQEFIEEENSSNTIAEAVHELINQGVGLNTTGSVYRSSPESKTEISGSPTEKAILSWAVTDFGMDMEKLKKSYAILHVETFNSEKKRSGVLVRKLADNTIHQHWKGAAEMILSICSSYFERNGKTYPLDTENRIKLENIIQGMAASSLRCIAFAYRQISEDEEKNGIPNASNSKEDGYTLMGIVGIKDPCRPGVKKAVETCKSAGVSIKMITGDNIFTAKAIATECGILDFDHNTASRGEVIEGSEFRNYSSEERLRRVDQIKVMARSTPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFTTVATVLRWGRCVYNNIQKFIQFQLTVNVAALTINFIAAVSAGEVPLTAVQLLWVNLIMDTLGALALATERPNDELMHKPPVGRTEPLITNIMWRNLLAQALYQIAILLIFQFQGSNIFNVSEAVNDTLIFNTFVLCQIFNEFNSRKLEKQNVFEGILKNHLFLGIVAVTVVLQVVMVEFLKKFANTVNLNGWQWGLCIAIAAISWPIGWVVKFLPVSNKPFLSYFKWF | 927 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 29003705 | 29007325 | + | Lsi02G022530.1 | Lsi02g02253 | 656995 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g02253 | 927 | Gene3D | - | 400 | 557 | IPR023299 | GO:0000166 | |
Lsi02g02253 | 927 | SMART | Cation_ATPase_N_a_2 | 85 | 162 | IPR004014 | - | |
Lsi02g02253 | 927 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 15 | 196 | - | - | |
Lsi02g02253 | 927 | Gene3D | - | 182 | 267 | - | - | |
Lsi02g02253 | 927 | PRINTS | P-type cation-transporting ATPase superfamily signature | 550 | 561 | - | - | |
Lsi02g02253 | 927 | PRINTS | P-type cation-transporting ATPase superfamily signature | 682 | 694 | - | - | |
Lsi02g02253 | 927 | PRINTS | P-type cation-transporting ATPase superfamily signature | 216 | 230 | - | - | |
Lsi02g02253 | 927 | PRINTS | P-type cation-transporting ATPase superfamily signature | 658 | 677 | - | - | |
Lsi02g02253 | 927 | PRINTS | P-type cation-transporting ATPase superfamily signature | 349 | 363 | - | - | |
Lsi02g02253 | 927 | PRINTS | P-type cation-transporting ATPase superfamily signature | 572 | 582 | - | - | |
Lsi02g02253 | 927 | Pfam | Cation transporter/ATPase, N-terminus | 90 | 156 | IPR004014 | - | |
Lsi02g02253 | 927 | Gene3D | - | 675 | 918 | - | - | |
Lsi02g02253 | 927 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 292 | 391 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi02g02253 | 927 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 629 | 738 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi02g02253 | 927 | SUPERFAMILY | HAD-like | 347 | 763 | IPR036412 | - | |
Lsi02g02253 | 927 | PRINTS | H+-transporting ATPase (proton pump) signature | 504 | 522 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi02g02253 | 927 | PRINTS | H+-transporting ATPase (proton pump) signature | 690 | 715 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi02g02253 | 927 | PRINTS | H+-transporting ATPase (proton pump) signature | 658 | 674 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi02g02253 | 927 | PANTHER | CATION TRANSPORTING ATPASE | 197 | 262 | - | - | |
Lsi02g02253 | 927 | SUPERFAMILY | Calcium ATPase, transduction domain A | 197 | 264 | IPR008250 | - | |
Lsi02g02253 | 927 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 356 | 554 | IPR023299 | GO:0000166 | |
Lsi02g02253 | 927 | TIGRFAM | ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type | 290 | 915 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
Lsi02g02253 | 927 | Gene3D | - | 558 | 674 | IPR023214 | - | |
Lsi02g02253 | 927 | Pfam | haloacid dehalogenase-like hydrolase | 347 | 672 | - | - | |
Lsi02g02253 | 927 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 263 | 902 | - | - | |
Lsi02g02253 | 927 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 197 | 262 | - | - | |
Lsi02g02253 | 927 | PANTHER | CATION TRANSPORTING ATPASE | 15 | 196 | - | - | |
Lsi02g02253 | 927 | PANTHER | CATION TRANSPORTING ATPASE | 263 | 902 | - | - | |
Lsi02g02253 | 927 | SFLD | p-type atpase | 331 | 711 | IPR044492 | - | |
Lsi02g02253 | 927 | SFLD | C1.7: P-type atpase like | 331 | 711 | - | - | |
Lsi02g02253 | 927 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 351 | 357 | IPR018303 | - | |
Lsi02g02253 | 927 | Gene3D | - | 280 | 375 | - | - | |
Lsi02g02253 | 927 | Pfam | Cation transporting ATPase, C-terminus | 743 | 913 | IPR006068 | - | |
Lsi02g02253 | 927 | Pfam | E1-E2 ATPase | 197 | 262 | - | - | |
Lsi02g02253 | 927 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 90 | 916 | IPR023298 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g02253 | Lsi-Chr2:29003705 | Lsi02g02841 | Lsi-Chr2:34592620 | 0 | dispersed | |
Lsi11g00779 | Lsi-Chr11:8958115 | Lsi02g02253 | Lsi-Chr2:29003705 | 2.22E-17 | dispersed | |
Lsi11g00454 | Lsi-Chr11:4754865 | Lsi02g02253 | Lsi-Chr2:29003705 | 1.06E-45 | transposed | |
Lsi11g00453 | Lsi-Chr11:4752213 | Lsi02g02253 | Lsi-Chr2:29003705 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g02253 | K01537 | - | csv:101220140 | 1632.08 |