Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02253 ATGAGCAAATACGAATCTACTTACCATGAGACGCTTCTCAACATCAGCATAGCTCGAAGGAGATGGAGATTTGCCTATGCAGCAATATATTCAATCCGGGCCATGCTTTCTCTTGCAGTGACCAAAAAAAATGGCCATTACAATTTACTCAACTTTGAGAACTTGCAGGAAGATTCTTATGAGGAACAAATAATCTGCACCAAAGATGATCAGAAGAAGCTGATTGAAATGGTAAAGAACAAAGACAAAGAAGCTTATCATGAGCTTGGAGAAGTTGGAACAATTGCAGCTTCTCTTGGAACGAATCCGGAGAATGGAATCAAGGACAATGGTGAAGTCGTGAATGAACGACGTCAAACATTCGGTACTAACACTTACCACAAGAGGCCTCGGAAGAGTTTCGTTCATTTTGTAGTGGAAGCTTTCAAGGACACCACCATCCTCATTTTACTTGTATGTGCGGCTCTGGCCCTTGGATTTGGAATAAAAGAACATGGAGTTCAAGAAGGATGGTATGAAGGAGGGAGCATATTTGTAGCTGTTGCGTTGGTAGTTGTTGTGTCAGCAATTAGTAACTTCAGACAGGAGCTTGGGGACCAAATTCCAGCTGATGGATTGTTCTTGAGTGGCCATTCTTTGCACGTGGATGAGTCAAGCATGACGGGAGAGAGCGATCACGTGGAACTCAATACAACAGAGAATCCCTTCTTGTTGTCTGGAACAAAAGTAGTAGATGGCTATGGTCAAATGCTGGTGACATCAGTGGGAATGGACACAGCATGGGCACGCTATTTCACTGGAAACACAAAGGATGATTTTGGGAACACTGAGTACAATGGTCGAAAAACAAACATAGATGATGTGCTCAATGCAGTTATTCGTATAGTTGCTGCTGCAGTTACCATAGTAGTGGTTGCAATCCCTGAAGGTTTGCCATTGGCTGTGACACTAACGCTTGCTTACTCTATGAAGAGAATGATGGCAGATCAGGCAATGGTGAGGAAACTGTCGGCTTGTGAAACAATGGGATCGGCAACAGTGATTTGCACGGACAAAACAGGTACTTTGACATTAAACCAAATGAAAGTAACCAAATTCTGGCTTGGCCAAGAGTTTATTGAGGAAGAAAACTCTTCCAATACCATAGCAGAGGCTGTTCATGAGTTGATAAATCAAGGAGTTGGCTTGAACACAACTGGTAGTGTCTATCGTTCTTCACCAGAATCCAAAACTGAAATCTCTGGTAGTCCAACTGAGAAAGCGATTCTATCTTGGGCGGTCACGGACTTTGGTATGGACATGGAGAAGTTGAAGAAGTCATATGCCATTCTTCATGTGGAAACCTTCAACTCAGAGAAGAAAAGAAGTGGGGTTTTGGTGAGAAAATTGGCTGATAACACAATCCATCAGCATTGGAAAGGAGCTGCTGAGATGATACTCTCAATTTGTTCAAGTTACTTTGAAAGAAATGGGAAAACATATCCCTTGGATACTGAGAACCGAATAAAACTTGAGAACATAATCCAAGGAATGGCAGCAAGTAGCCTAAGATGCATTGCCTTTGCTTATAGACAAATCTCAGAAGACGAGGAAAAAAATGGCATACCAAATGCCTCAAACTCGAAAGAAGATGGCTATACATTAATGGGAATAGTTGGCATTAAAGATCCATGTAGGCCAGGGGTGAAGAAAGCCGTGGAAACATGTAAATCAGCTGGAGTTTCCATTAAGATGATCACAGGAGACAACATTTTCACAGCAAAAGCTATAGCCACAGAATGTGGAATACTAGATTTTGATCACAACACAGCAAGCAGAGGCGAAGTAATAGAAGGTTCCGAGTTCCGAAACTACTCAAGTGAAGAGAGACTGCGGAGAGTCGATCAAATCAAGGTTATGGCAAGATCCACTCCATTTGACAAGCTTTTGATGGTTCAATGCTTGAAACAGAAAGGCCATGTCGTAGCAGTAACTGGAGACGGCACAAATGATGCACCGGCTCTAAAAGAAGCTGACATAGGACTTTCCATGGGCATTGAAGGCACCGAGGTTGCAAAAGAGAGTTCAGACATTGTTATCTTGGATGATAACTTCACCACAGTAGCCACAGTCTTGAGGTGGGGAAGATGTGTATATAACAACATCCAAAAATTCATCCAATTTCAATTGACGGTCAATGTCGCAGCTCTTACAATTAACTTTATAGCAGCAGTATCAGCCGGAGAAGTTCCTTTAACAGCAGTCCAATTATTGTGGGTGAATCTCATAATGGATACATTGGGTGCTCTTGCACTTGCTACTGAGAGACCCAATGATGAATTAATGCACAAGCCTCCCGTGGGAAGAACTGAGCCCCTAATAACAAATATCATGTGGAGAAACCTATTAGCTCAAGCTTTATACCAAATAGCAATACTCTTAATTTTCCAGTTCCAAGGAAGCAACATCTTCAACGTAAGTGAAGCGGTAAACGATACACTAATCTTCAACACTTTTGTCCTTTGCCAAATCTTTAATGAGTTCAACTCAAGAAAACTAGAGAAACAGAACGTCTTTGAAGGCATCCTAAAGAATCATTTATTTCTAGGGATTGTGGCAGTAACCGTTGTTCTACAAGTTGTTATGGTAGAATTCCTAAAGAAATTTGCAAACACGGTGAATCTAAATGGTTGGCAGTGGGGACTTTGCATTGCCATTGCAGCGATTTCTTGGCCTATTGGTTGGGTTGTCAAATTCTTACCCGTTTCTAATAAGCCTTTCCTTAGCTACTTCAAATGGTTTTAA 2784 41.63 MSKYESTYHETLLNISIARRRWRFAYAAIYSIRAMLSLAVTKKNGHYNLLNFENLQEDSYEEQIICTKDDQKKLIEMVKNKDKEAYHELGEVGTIAASLGTNPENGIKDNGEVVNERRQTFGTNTYHKRPRKSFVHFVVEAFKDTTILILLVCAALALGFGIKEHGVQEGWYEGGSIFVAVALVVVVSAISNFRQELGDQIPADGLFLSGHSLHVDESSMTGESDHVELNTTENPFLLSGTKVVDGYGQMLVTSVGMDTAWARYFTGNTKDDFGNTEYNGRKTNIDDVLNAVIRIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRKLSACETMGSATVICTDKTGTLTLNQMKVTKFWLGQEFIEEENSSNTIAEAVHELINQGVGLNTTGSVYRSSPESKTEISGSPTEKAILSWAVTDFGMDMEKLKKSYAILHVETFNSEKKRSGVLVRKLADNTIHQHWKGAAEMILSICSSYFERNGKTYPLDTENRIKLENIIQGMAASSLRCIAFAYRQISEDEEKNGIPNASNSKEDGYTLMGIVGIKDPCRPGVKKAVETCKSAGVSIKMITGDNIFTAKAIATECGILDFDHNTASRGEVIEGSEFRNYSSEERLRRVDQIKVMARSTPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFTTVATVLRWGRCVYNNIQKFIQFQLTVNVAALTINFIAAVSAGEVPLTAVQLLWVNLIMDTLGALALATERPNDELMHKPPVGRTEPLITNIMWRNLLAQALYQIAILLIFQFQGSNIFNVSEAVNDTLIFNTFVLCQIFNEFNSRKLEKQNVFEGILKNHLFLGIVAVTVVLQVVMVEFLKKFANTVNLNGWQWGLCIAIAAISWPIGWVVKFLPVSNKPFLSYFKWF 927
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29003705 29007325 + Lsi02G022530.1 Lsi02g02253 656995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02253 927 Gene3D - 400 557 IPR023299 GO:0000166
Lsi02g02253 927 SMART Cation_ATPase_N_a_2 85 162 IPR004014 -
Lsi02g02253 927 PANTHER CALCIUM-TRANSPORTING ATPASE 15 196 - -
Lsi02g02253 927 Gene3D - 182 267 - -
Lsi02g02253 927 PRINTS P-type cation-transporting ATPase superfamily signature 550 561 - -
Lsi02g02253 927 PRINTS P-type cation-transporting ATPase superfamily signature 682 694 - -
Lsi02g02253 927 PRINTS P-type cation-transporting ATPase superfamily signature 216 230 - -
Lsi02g02253 927 PRINTS P-type cation-transporting ATPase superfamily signature 658 677 - -
Lsi02g02253 927 PRINTS P-type cation-transporting ATPase superfamily signature 349 363 - -
Lsi02g02253 927 PRINTS P-type cation-transporting ATPase superfamily signature 572 582 - -
Lsi02g02253 927 Pfam Cation transporter/ATPase, N-terminus 90 156 IPR004014 -
Lsi02g02253 927 Gene3D - 675 918 - -
Lsi02g02253 927 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 292 391 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g02253 927 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 629 738 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g02253 927 SUPERFAMILY HAD-like 347 763 IPR036412 -
Lsi02g02253 927 PRINTS H+-transporting ATPase (proton pump) signature 504 522 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g02253 927 PRINTS H+-transporting ATPase (proton pump) signature 690 715 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g02253 927 PRINTS H+-transporting ATPase (proton pump) signature 658 674 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g02253 927 PANTHER CATION TRANSPORTING ATPASE 197 262 - -
Lsi02g02253 927 SUPERFAMILY Calcium ATPase, transduction domain A 197 264 IPR008250 -
Lsi02g02253 927 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 356 554 IPR023299 GO:0000166
Lsi02g02253 927 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 290 915 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lsi02g02253 927 Gene3D - 558 674 IPR023214 -
Lsi02g02253 927 Pfam haloacid dehalogenase-like hydrolase 347 672 - -
Lsi02g02253 927 PANTHER CALCIUM-TRANSPORTING ATPASE 263 902 - -
Lsi02g02253 927 PANTHER CALCIUM-TRANSPORTING ATPASE 197 262 - -
Lsi02g02253 927 PANTHER CATION TRANSPORTING ATPASE 15 196 - -
Lsi02g02253 927 PANTHER CATION TRANSPORTING ATPASE 263 902 - -
Lsi02g02253 927 SFLD p-type atpase 331 711 IPR044492 -
Lsi02g02253 927 SFLD C1.7: P-type atpase like 331 711 - -
Lsi02g02253 927 ProSitePatterns E1-E2 ATPases phosphorylation site. 351 357 IPR018303 -
Lsi02g02253 927 Gene3D - 280 375 - -
Lsi02g02253 927 Pfam Cation transporting ATPase, C-terminus 743 913 IPR006068 -
Lsi02g02253 927 Pfam E1-E2 ATPase 197 262 - -
Lsi02g02253 927 SUPERFAMILY Calcium ATPase, transmembrane domain M 90 916 IPR023298 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02253 Lsi-Chr2:29003705 Lsi02g02841 Lsi-Chr2:34592620 0 dispersed
Lsi11g00779 Lsi-Chr11:8958115 Lsi02g02253 Lsi-Chr2:29003705 2.22E-17 dispersed
Lsi11g00454 Lsi-Chr11:4754865 Lsi02g02253 Lsi-Chr2:29003705 1.06E-45 transposed
Lsi11g00453 Lsi-Chr11:4752213 Lsi02g02253 Lsi-Chr2:29003705 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02253 K01537 - csv:101220140 1632.08