Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02256 ATGTTTGCTTCAACAATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTAGTGTCTCTTCTACCACAAGAGTCCACCCTGATTTCACCTGCTTAAACCCTCTCCTTCCATCTTTTTCTGATATTCACCACTCCCCACAAAAGCCCAAGAAGAAACGAAGCCTCCCCGGTAACCCAGACCCGGATGCGGAAGTGATAACGCTTTCGCCGAAAACACTATTAGCAACAAATAGATTTGTGTGTGAGATTTGCAACAAGGGTTTCCAAAGGGATCAAAATTTGCAGTTGCATAGGAGAGGTCACAATTTACCATGGAAATTGAAGCAAAGAAACAACAAAGAAGTGAAGAAGAAAGCCTATGTTTGTCCAGAACCAAGTTGTGTTCATCATCATCCTTCAAGAGCATTAGGAGATCTCACAGGAATCAAAAAACATTATTGCAGAAAACATGGTGAAAAGAAATGGAAATGTGATAAATGTTCCAAAGTTTATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGGGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATAACCCATAGAGCTTTTTGTGATGCATTGGCTGAAGAAAGTGCAAGGCTCTCAGCTAACCAATTGGAAATGGCTGCTGCCGCGGTGGCTGCTGCCTCGGGTGCCACTGACATCAACATAAACTCGTCCTCGACCACCGCCGCCCAATCGCTCTTTCTTTATGGTAATCACCATCAATTCTCAAACTCGTCATTATCACTACCACTACCACCACCACCTCTGTCGCAAACCCACATGTCTTTAAACCCTTGGGACCATCCCCAAAACCCTAACTCTAATCACACCCTCCAAATCATTAAGCCAGAGGATTCAAATTCTCATAATTTTCACCAAATTCCAAATTTGCCCCTCTCCAATCCCTCATCTTCCAACAAGAACAACCCTTTTGGTCTAATTCAAGACCACCACCAACAAAAGGCAGGCTCATCCTCCTCCTCTTCCATGATAACCTCACCCTTCAGGAACCTCCACGTGTCGGTGCACCCGGGATCAAATGCTGCCACGTCAGCTCACCTATCAGCCACAGCCCTACTCCAAAAGGCAGCAACAGTTGGCGTTGGCGCTGCAAAATCCGGTCACCATCAGCCCGAGTCAGTGGGTCACATGACTCACTTCAACATTCCCAGCCTCCCCGAGTTCGGGCCACCGAATCACATTGACTCACTGAGTCAACTCGATCCCGACTATGCCACATGGCAGAAGACTGACCGGCTGACCAGGGACTTTCTCGGTCTGACTGGAGATGGGAACAATGGCGTTAACGGTGGTGGTGGTTCTGGCGGCGGGGGAGTGGTGCAGGTTAGCATGAGCGTTAAAGATATGCTAACGTACGCAAGTGGGTTGGAGATGTTTAAGCCTCACAATAATAATAATAATAATAATAGTAATAATAATTTTGGATACGCGGAGCCAGCTGCCAATGAAACTTGGGGAGACTGTTGA 1527 46.17 MFASTMSNSTSLSEEASVSSTTRVHPDFTCLNPLLPSFSDIHHSPQKPKKKRSLPGNPDPDAEVITLSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLEMAAAAVAAASGATDININSSSTTAAQSLFLYGNHHQFSNSSLSLPLPPPPLSQTHMSLNPWDHPQNPNSNHTLQIIKPEDSNSHNFHQIPNLPLSNPSSSNKNNPFGLIQDHHQQKAGSSSSSSMITSPFRNLHVSVHPGSNAATSAHLSATALLQKAATVGVGAAKSGHHQPESVGHMTHFNIPSLPEFGPPNHIDSLSQLDPDYATWQKTDRLTRDFLGLTGDGNNGVNGGGGSGGGGVVQVSMSVKDMLTYASGLEMFKPHNNNNNNNSNNNFGYAEPAANETWGDC 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29097778 29100956 - Lsi02G022560.1 Lsi02g02256 656998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02256 508 MobiDBLite consensus disorder prediction 273 343 - -
Lsi02g02256 508 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 490 - -
Lsi02g02256 508 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 490 - -
Lsi02g02256 508 Pfam Zinc finger, C2H2 type 78 100 IPR013087 -
Lsi02g02256 508 SMART c2h2final6 154 174 IPR013087 -
Lsi02g02256 508 SMART c2h2final6 78 100 IPR013087 -
Lsi02g02256 508 SMART c2h2final6 119 149 IPR013087 -
Lsi02g02256 508 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
Lsi02g02256 508 MobiDBLite consensus disorder prediction 483 498 - -
Lsi02g02256 508 MobiDBLite consensus disorder prediction 39 63 - -
Lsi02g02256 508 MobiDBLite consensus disorder prediction 483 508 - -
Lsi02g02256 508 Gene3D Classic Zinc Finger 147 210 - -
Lsi02g02256 508 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Lsi02g02256 508 MobiDBLite consensus disorder prediction 259 343 - -
Lsi02g02256 508 Gene3D Classic Zinc Finger 57 126 - -
Lsi02g02256 508 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02256 Lsi-Chr2:29097778 Lsi03g02034 Lsi-Chr3:31704220 9.24E-109 dispersed
Lsi02g02256 Lsi-Chr2:29097778 Lsi01g00694 Lsi-Chr1:5544880 5.65E-110 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24895 PF00096 zf-C2H2 0.0051 CL0361 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02256 K25870 - csv:101208253 793.882