Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02261 ATGGGTAACTCGGATTACGTGTACCCATCATCGACGGCAGCAGGAGATGGCGGCGAGTGCTTACACAGGGCGGCGATTCCGCCGGCGCAGCCGTTCGTGAAGTCGCTGAAGAACGGTCTGAAGGAGACGTTCTTCCCGGACGACCCACTCCGGCAGTTCAAGAATCAGCCGGCGAGAAGGAAGATGATTCTGGGTTTGCAGTACTTTTTTCCGGTGGTGGAATGGGGGCCGCGCTATAATTTAGGGCTTCTGAAATCGGATCTTATTTCTGGTATCACCATTGCCAGCCTCGCCATTCCTCAGGGCATTAGCTACGCTAAGCTTGCTAACTTGCCCCCTATCCTCGGCCTCTATTCGAGTTTTATTCCGCCGTTGATTTATGCGATGATGGGAAGCTCGAAGGACTTGGCCGTCGGAACAGTGGCAGTGGCGTCGCTTCTGATCAGCTCAATGTTAGGGGCGGAGGTTAACCCTGTCCAAAACCCCACTCTTTATCTCCACCTTGCTTTCACCGCCACTTTCTTTGCTGGAGTCTTCCAAGCCTCCTTGGGCCTCTTAAGGCTAGGGTTCATTGTTGATTTTTTGTCACATGCAACCATTGTTGGGTTCATGGGCGGTGCGGCCACGGTGGTGTGCCTACAACAGCTCAAAGGCATTTTAGGATTAACTCATTTCACTCACGCAACCGACCTAGTCTCCGTCCTCCATTCCGTCTTTACCCAAGTTCACGAGTGGAGATGGGAAAGTGGGGTCTTGGGATGCTGTTTTCTCTTCTTCCTCCTCATCACCAGATACTTTAGCAAGAAAAAGCCAAAATTCTTCTGGATATCGGCAATGGCACCTTTGACCTCAGTGATTTTAGGAAGCCTTCTGGTGTTCCTCACTCATGCTGAAAAACACGGTGTCGAAGTGATTGGAGAATTGAAGAAAGGGCTAAATCCAGTGTCGATAACAAATTTGGTGTTTATGTCACCTTATCTTTCAACTGCCATTAAAACTGGCATCATCACTGGCGTCATAGCTCTTGCGGAAGGAATAGCAGTTGGAAGAAGCTTTGCTATGTTCAAGCATTACAACATTGATGGCAACAAGGAAATGGTAGCCATTGGCACAATGAACATGGTCGGCTCTTGCTTTTCTTGCTATCTCACCACAGGCCCATTTTCGCGATCGGCTGTGAATTACAATGCAGGATGCAAAACGGCGGTATCAAACGTGGTAATGGCGATTGCAGTGATGTTGACATTGTTATTCTTGACTCCTCTGTTCCACTACACTCCTCTTGTGGTGCTTTCTTCCATCATCATTTCCGCTATGCTTGGCCTCATCGATTACGAAGCTGCTATTCACTTGTGGAAGGTCGATAAATTTGATTTCCTTGTCTGCATTGGTGCTTATGCTGGTGTTGTATTTGCCAGTGTTGAAATTGGCTTGGTCATTGCGGTATGTTCTCACTTCTTCTTTCGTGTTTTTGGGTCTGCCCATATTATTCACAAGGTTGTGGCCGACTTCTTGCAGGTGGTTATATCTCTGCTTAGACTACTTTTGTTCGTTGCGAGGCCGAGGACGCTTGTGCTTGGAAACCTTCCCAATTCTACAGTTTACAGGAACGTTGAGCAATACCCAAATGCCGATAATGTTCCCGGCATTCTCATACTTGAGATTGACGCTCCCATTTACTTTGCCAATTCCAGCTACTTGAGAGAAAGGATTATAAGGTGGGTTGATGAGGAGGAAGATAGGATAAAAGCTTCCGGTGAAAGTACCTTACAATATGTCGTATTGGACATGAGTGCTGTTGGCAACATTGATACAAGTGGAATAAGTATGTTTGAAGAGATGAAGAAGATTTTAGAAAGAAGGGGATTGAAGATAGTTTTGGCCAACCCTGGAGCTGAGGTAATGAAGAAGCTGGACAAGGGCAAGTTCATCGAGAGCCTCGGACACGAATGGATCTATCTTACGGTCGCTGAAGCTGTAGCGGCCTGCAACTATATGCTTCACTCTTGCAAACCAAACCCTGTAACTGATGAGAAAGCTGAGCCATGGAACAATGTCTAA 2061 47.21 MGNSDYVYPSSTAAGDGGECLHRAAIPPAQPFVKSLKNGLKETFFPDDPLRQFKNQPARRKMILGLQYFFPVVEWGPRYNLGLLKSDLISGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSKDLAVGTVAVASLLISSMLGAEVNPVQNPTLYLHLAFTATFFAGVFQASLGLLRLGFIVDFLSHATIVGFMGGAATVVCLQQLKGILGLTHFTHATDLVSVLHSVFTQVHEWRWESGVLGCCFLFFLLITRYFSKKKPKFFWISAMAPLTSVILGSLLVFLTHAEKHGVEVIGELKKGLNPVSITNLVFMSPYLSTAIKTGIITGVIALAEGIAVGRSFAMFKHYNIDGNKEMVAIGTMNMVGSCFSCYLTTGPFSRSAVNYNAGCKTAVSNVVMAIAVMLTLLFLTPLFHYTPLVVLSSIIISAMLGLIDYEAAIHLWKVDKFDFLVCIGAYAGVVFASVEIGLVIAVCSHFFFRVFGSAHIIHKVVADFLQVVISLLRLLLFVARPRTLVLGNLPNSTVYRNVEQYPNADNVPGILILEIDAPIYFANSSYLRERIIRWVDEEEDRIKASGESTLQYVVLDMSAVGNIDTSGISMFEEMKKILERRGLKIVLANPGAEVMKKLDKGKFIESLGHEWIYLTVAEAVAACNYMLHSCKPNPVTDEKAEPWNNV 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29179045 29188006 + Lsi02G022610.1 Lsi02g02261 657003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02261 686 Pfam STAS domain 541 659 IPR002645 -
Lsi02g02261 686 TIGRFAM sulP: sulfate permease 71 487 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi02g02261 686 Pfam Sulfate permease family 84 463 IPR011547 GO:0016021
Lsi02g02261 686 ProSitePatterns SLC26A transporters signature. 113 134 IPR018045 GO:0008271|GO:0008272
Lsi02g02261 686 Gene3D STAS domain 520 666 IPR036513 -
Lsi02g02261 686 PANTHER SLC26A/SULP TRANSPORTER-RELATED 2 483 - -
Lsi02g02261 686 CDD STAS_SulP_like_sulfate_transporter 541 656 - -
Lsi02g02261 686 ProSiteProfiles STAS domain profile. 540 663 IPR002645 -
Lsi02g02261 686 PANTHER SULFATE TRANSPORTER 2 483 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi02g02261 686 PANTHER SULFATE TRANSPORTER 488 680 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi02g02261 686 PANTHER SLC26A/SULP TRANSPORTER-RELATED 488 680 - -
Lsi02g02261 686 SUPERFAMILY SpoIIaa-like 545 664 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02261 Lsi-Chr2:29179045 Lsi09g00959 Lsi-Chr9:12534076 0 dispersed
Lsi02g01675 Lsi-Chr2:22545665 Lsi02g02261 Lsi-Chr2:29179045 6.15E-116 transposed
Lsi03g00777 Lsi-Chr3:11172419 Lsi02g02261 Lsi-Chr2:29179045 1.56E-180 transposed
Lsi04g02349 Lsi-Chr4:30676981 Lsi02g02261 Lsi-Chr2:29179045 0 transposed
Lsi07g00180 Lsi-Chr7:1946016 Lsi02g02261 Lsi-Chr2:29179045 0 transposed
Lsi11g00133 Lsi-Chr11:1475689 Lsi02g02261 Lsi-Chr2:29179045 0 transposed
Lsi02g02261 Lsi-Chr2:29179045 Lsi05g01632 Lsi-Chr5:23958804 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02261 K17471 - csv:101222260 1222.99