Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02266 ATGGATTTAACGAATGGGGGCGAGGCCGGCAACGCTCCAATAGCTAAGAATTCGGGTAATCAAGTATCTGATATTGTTTCTGGTAAGTCTAGCAATATCCAAGAGAAGGATTTGAGTTCAAAGTTGGGGACAGGAAGCAAAAGCAATAGGGATATGGTATTTCGTGCTGATAAGATTGATTTCAAGAGTTGGGATATTCAGCTGGAGAAGCACTTGAGCAGGGCTTGGTCAAGGGACAGGGAAGCGCCTGCTAAAAAGGAAGAATGGGACATTGACTTGTCTAAACTTGATATCAGATATGTTAAAGCTCATGGAACTTATGGTACTATTTACAGAGGAAACTATGATGGCAATGATGTTGCAGGTTGTCTGTCCTACAAGAATACTGCTTTAACATTTATAGAATTGATAACATTTTGGAACTTCATGCATAAATGTATCCTGCCCGTTAGATTATTATTGGACAATATAGTCGAGTTTTTGTTTGTTTTGTTGCTTCATGATGATATTCTGAATATTGTAGTGAAAGTGCTTGATTGGGGGGAGGATGGTGTTTCCTCAGTTGCTGAAATTGCTGCTCTTCGAACATCTTTTCGCCAGGAAGTTGCTGTATGGCATAAGCTTGACCATCCCAATGTTGCAAAGTTTTATGGAGCATCAATGGGGACGTCCAACCTTAAAATCCCTCCCAAAAGCTCATCATTCGACAGTAACCAATCTTTTCCTTCAAGGGCTTGCTGCGTTGTTGTTGAGTATCTTCCAGGTGGAACACTAAAGAGCTTTTTAATCAAAAATAGGAAAAGGAAACTTGCATTTAAGGTTGTGATTCAACTTGCTTTGGATCTTTCTAGAGGTTTAAGTTATCTACACTCGAAAAAGATTGTACACCGCGATATTAAAACAGAGAATGTGCTGCTAGATGCTCAGAAGACTCTGAAAATTGTTGATTTTGGCGTTGCCCGGGTTGAAGCACAGAACCCAAGGGATATGACTGGAGAGACTGGCACCCTTGGTTACATGGCCCCTGAGGTCCTTGATGGTAAGCCTTATAATCGGAAATGTGATGTCTACAGTTTTGGTATATGTTTGTGGGAAACGTATTGCTGCGATATGCCTTACCCAGATCTCAGTTTTGCTGAAGTGTCATCTGCAGTTGTGCGACAGTTTTCTTCAAAGCTTGTGACTTCTCATTGTTTACATTATGTATACAAAATGGTGAGAAGTAGCTCGGCCGGTTTGATTTGGCCATTGACTTCAATGGATGAATCAATAGTTTTTCGCCAAATAGAAACATTAGTTTTTGCTCTTACTTGTTCCCCATCATGGACTATTTCCTGCTTTGTCTATTCAATAGATTTGATTGAATTAGCAATCTCTAAGTGGTTTGCTCAAATCATGTGTATCCATGGAAGGAGAAAATTTAGTTCAAATGTCAAATGGGAGAAGAACATTCTTGGTTACTTTTATCTTTTCCCAAATGTTTTTAAAGAACAAACATGTATAAAGCAATTGTCGACAATAAAAATTAAGGCCCTGATGTACTGTAAGTGCTTGTGGGTGTGTTCTGAAGTTGAATTCATGCTTAAAACTTACCTTCAACAGAATTTACGACCGGATATCCCTAGATGCTGCCCGAGTTCGTTTGCAAATATCATGAAAAGATGTTGGGACGCAAATCCAGAAAGGCGACCTGACATGGACGAGGTCGTAAAATTGTTGGAAGCTATTGATACAAGTAAAGGGGGTGGCATGGTTACTGAAGATCAGATTAGTTGTTTCTGTTTCCGCACGCCTCGTGATGAAGATGGTTCAGAGAAGTCATTGAGCTCTTCTAGAGTTGTTAGAGGAGCAATGATTAATTCAATATCTGCAATGGCGGAGACCACTTCCGACGCATTGTCACCGGCGTTCATGACAGAGTTTCTGAGAAAAGCCGGTGGAACCGCCATTATTGATGGTGGTTTGGCCACCGAGCTGGAACGACACGGCGCCGACCTCAACGATCCTCTTTGGAGTGCCAAATGTCTCCTCACTTCTCCTCACCTTATTCACAGAGTACACATGGATTACCTTGAAGCAGGGGCAGATATTATCATCACGGCATCTTATCAAGCCACCTTCCAGGGATTTGAGTCCAAAGGACTTTCAAGAGATGAAAGTGAATCCTTGTTAAGAAAGAGTGTGGAGATCGCCTGTTCAGCACGGGATAATTATTATGACCGGTGTAATACAAGTATTTCTGATGAGACTCCAGATGGTAAAATTTTCAAAAAACGTCAGATACTTATAGCAGCTTCCGTGGGGAGCTATGGAGCATATTTGGCTGATGGGTCTGAGTACAGTGGTAATTATGGTGACAATATTACACTTGAGGCCCTGAAAGAATTCCATAGGAGAAGGGTAAAAGTGCTTGCAGAGTCAGGGGCTGACCTGTTTGCATTTGAAACCATTCCCAATAAACTTGAAGCTAAGGCATATGCAGAACTCTTGGAGGAAGAAAATATAAGCATTCCTGCATGGTTTGCTTTCAACTCGAAGGATGGTATTCATGTGGTTAGTGGTGATTCTTATTCTGAATGTGTGTCGATTGCTGAATCGTGCAGAAATACTGTGGCAGTTGGAATCAACTGTACACCGCCTAGAGAGTTGAATGTTAGAGCCTTTTCAAGAAGTCGAAAGAAAAGAGAAAAATTTATCATTTGTTCTGATTATTTGTTCATTGCGTTAATGTCCTTTCTTCTCCCTTTCTTGAATTTCACTTGTTCTTCCCTCGTGATAAATTATAGAAAAGTGGAAGTCACTACAAAGCCTATAGTGATATATCCAAATAGCGGTGAAAGTTATGATGCTGATCTAAAGGAATGGGTGCAAAATACTGGGGTATCTGATGATGATTTTGTATCTTATGTAAACAAATGGTGTGAGACTGGGGCGTCGTTAGTTGGAGGTTGCTGCCGAACCACTCCAAATACAATCAGAGCAATTTACAGGACCCTCTCAAAGAGATAA 3009 40.81 MDLTNGGEAGNAPIAKNSGNQVSDIVSGKSSNIQEKDLSSKLGTGSKSNRDMVFRADKIDFKSWDIQLEKHLSRAWSRDREAPAKKEEWDIDLSKLDIRYVKAHGTYGTIYRGNYDGNDVAGCLSYKNTALTFIELITFWNFMHKCILPVRLLLDNIVEFLFVLLLHDDILNIVVKVLDWGEDGVSSVAEIAALRTSFRQEVAVWHKLDHPNVAKFYGASMGTSNLKIPPKSSSFDSNQSFPSRACCVVVEYLPGGTLKSFLIKNRKRKLAFKVVIQLALDLSRGLSYLHSKKIVHRDIKTENVLLDAQKTLKIVDFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWETYCCDMPYPDLSFAEVSSAVVRQFSSKLVTSHCLHYVYKMVRSSSAGLIWPLTSMDESIVFRQIETLVFALTCSPSWTISCFVYSIDLIELAISKWFAQIMCIHGRRKFSSNVKWEKNILGYFYLFPNVFKEQTCIKQLSTIKIKALMYCKCLWVCSEVEFMLKTYLQQNLRPDIPRCCPSSFANIMKRCWDANPERRPDMDEVVKLLEAIDTSKGGGMVTEDQISCFCFRTPRDEDGSEKSLSSSRVVRGAMINSISAMAETTSDALSPAFMTEFLRKAGGTAIIDGGLATELERHGADLNDPLWSAKCLLTSPHLIHRVHMDYLEAGADIIITASYQATFQGFESKGLSRDESESLLRKSVEIACSARDNYYDRCNTSISDETPDGKIFKKRQILIAASVGSYGAYLADGSEYSGNYGDNITLEALKEFHRRRVKVLAESGADLFAFETIPNKLEAKAYAELLEEENISIPAWFAFNSKDGIHVVSGDSYSECVSIAESCRNTVAVGINCTPPRELNVRAFSRSRKKREKFIICSDYLFIALMSFLLPFLNFTCSSLVINYRKVEVTTKPIVIYPNSGESYDADLKEWVQNTGVSDDDFVSYVNKWCETGASLVGGCCRTTPNTIRAIYRTLSKR 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29246055 29257194 + Lsi02G022660.1 Lsi02g02266 657008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02266 1002 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 26 121 - -
Lsi02g02266 1002 Gene3D Transferase(Phosphotransferase) domain 1 235 421 - -
Lsi02g02266 1002 Gene3D Transferase(Phosphotransferase) domain 1 509 590 - -
Lsi02g02266 1002 SUPERFAMILY Protein kinase-like (PK-like) 87 574 IPR011009 -
Lsi02g02266 1002 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 172 394 - -
Lsi02g02266 1002 ProSiteProfiles Homocysteine-binding domain profile. 637 999 IPR003726 -
Lsi02g02266 1002 SMART serkin_6 155 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02266 1002 SUPERFAMILY Homocysteine S-methyltransferase 645 1001 IPR036589 -
Lsi02g02266 1002 ProSiteProfiles Protein kinase domain profile. 96 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02266 1002 Pfam Protein tyrosine and serine/threonine kinase 195 407 IPR001245 GO:0004672|GO:0006468
Lsi02g02266 1002 Pfam Protein tyrosine and serine/threonine kinase 529 573 IPR001245 GO:0004672|GO:0006468
Lsi02g02266 1002 Pfam Homocysteine S-methyltransferase 650 997 IPR003726 -
Lsi02g02266 1002 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 531 594 - -
Lsi02g02266 1002 Gene3D Phosphorylase Kinase; domain 1 89 228 - -
Lsi02g02266 1002 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 26 121 - -
Lsi02g02266 1002 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 531 594 - -
Lsi02g02266 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Lsi02g02266 1002 Gene3D - 638 997 IPR036589 -
Lsi02g02266 1002 MobiDBLite consensus disorder prediction 14 44 - -
Lsi02g02266 1002 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 172 394 - -
Lsi02g02266 1002 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02266 Lsi-Chr2:29246055 Lsi03g01392 Lsi-Chr3:24889505 1.16E-28 dispersed
Lsi04g00254 Lsi-Chr4:2591011 Lsi02g02266 Lsi-Chr2:29246055 1.38E-88 transposed
Lsi09g01304 Lsi-Chr9:20893883 Lsi02g02266 Lsi-Chr2:29246055 1.99E-152 transposed
Lsi02g02266 Lsi-Chr2:29246055 Lsi05g01626 Lsi-Chr5:23901512 2.94E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83426 PF02574 S-methyl_trans 4.10E-73 No_clan Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02266 K00547 - csv:101207522 602.438