Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02327 ATGTCCCTTTTTTCCCACCTTTTTCTCTTTCTTCTCACCATAGCATCCCTCTCCGTCGCCGCCGTTGAATGCCCTCTCAACTTCACCGTCCTCCGCCAATTCTCCCAAGGCTCCGCCGTTTCCCGCCCCGATTTCTCCGACGAATGTCAATACATTCGCCTTGGTCTCCGCCTTGTCCTCTCGCAGTACCTCAAACTCACTGGCTCATTCTTACCCCCGGTGAACTCTTCCGATTCATGCTGGAATTCTTACCAATCGACTGTGAATGTCTCTTGGCCGAATTTCGATATTCGGAGTTCTTGCGGGTTTCAAACTGGGTGGATCTCACAGGGATGTACGAACATCAGGACCAAATCCGAGTTCGAGAGAGTCGTTCCTAAATCGGCCATAGATGGTGTTGTTGCGAGCTGTAATCAATCGCTTGAAAATGGTTCCCCCTGTGCCTTGTGCACGACGAGGCTCGCATCCGTTCAGGCTTCTTTCTTGACCGGTCCGTCGATCGGTAATGTCACCGATTGCCCTGCATATCCGTCGATCTACACGGCGGCGTTTGTGAATCAGTTCGGACCGACCGATTGGGGAACTGCTAAATGCTTATTCTCTCTCAATCCTCCTTCGTCGGGGAATTCGAGAAGCAAGAAGCGGAATACGGTGGTGTTAGTTGTTGTAATTTGTTGTGGCGTTGCGGCAGCGGCGGTGGCGGTTGCTGGCGGGTTGTTTTTCTGGCAAAAACAGGGGAAAGTGAAGAAGAACGATAGAATTGGTAGAGTTGAGACAGGGTTGGGTTCTGGATTGGAATCGATAAGTGCAAGCACTACTTTGGTGAAGTTCACATTCGATGAAATCAAGAGGGCGACAAGGAATTTTTCTAGAGATAACATAATTGGGAGAGGTGGTTATGGGAATGTGTATAAAGGGGTTCTATCAGATGATTCTGAAGTTGCATTGAAGAGGTTTAAGAACTGTTCTGCAGCAGGGGACGCCATTTTTGCTCATGAAGTGGAGGTAATTTCAAGTGTTAGGCATGTTAATCTTGTTGCTTTAAGAGGATATTGTCTTGCAACTACTCCAATGGAGGGTCACCAGAGGATAATTGTGTGTGATTTGATGAAGAATGGGAGTCTTTATGACCATTTGTTTGGGTTTTTAGATAAGAGATTGAGTTGGCCAATTAGGCAAAAGATTGCTCTTGGCACAGCTAGGGGATTGGCTTATCTGCATTATGGAGCCCAGCCTGCCATTATCCATAGAGATATCAAAGCCAGCAACATTCTTTTGGATGAAAACTTTGAACCCAAGGTGGCTGACTTTGGTTTAGCTAAGTTCACTCCAGAAGGAATGACTCATTTGAGCACAAGAGTTGCTGGAACTATGGGGTATGTGGCGCCCGAGTACGCCTTATACGGCCAATTGACGGAGAGGAGTGATGTGTATAGCTTTGGAGTTGTTTTGCTCGAGCTTTTGAGTGGAAGGAAGGCGCTCGGGGTGAGGAGCCATGACAGCCAGCCCTTTCTAGTGACTGATTGGGCTTGGTCTTTGGTGAGGGAACACAAAGCAATGGATGTTATTGAAGAAGGCATGCCAGAGCTGGGTTCTCCAGAGGTTGTTGAGAAGTATGTATTGATTGCTGTTCTTTGTTCCCATCCCCAACTCTATGCCAGGCCATCAATGGATCAAGTTGTGAAAATGTTGGAAACTGAACTCTCTGTTCCTTCAATCCCAGAGAGACCCATCCCTCTAGTTGCTGATATTGATGAAATTGAGAGATCTATGAGTAGTAGTGGCTCTGCTCCGCATTCTGGTTCAGTTGGCTTTCATAGTTTCACATTACGAAATGACCATAAGTAG 1848 47.08 MSLFSHLFLFLLTIASLSVAAVECPLNFTVLRQFSQGSAVSRPDFSDECQYIRLGLRLVLSQYLKLTGSFLPPVNSSDSCWNSYQSTVNVSWPNFDIRSSCGFQTGWISQGCTNIRTKSEFERVVPKSAIDGVVASCNQSLENGSPCALCTTRLASVQASFLTGPSIGNVTDCPAYPSIYTAAFVNQFGPTDWGTAKCLFSLNPPSSGNSRSKKRNTVVLVVVICCGVAAAAVAVAGGLFFWQKQGKVKKNDRIGRVETGLGSGLESISASTTLVKFTFDEIKRATRNFSRDNIIGRGGYGNVYKGVLSDDSEVALKRFKNCSAAGDAIFAHEVEVISSVRHVNLVALRGYCLATTPMEGHQRIIVCDLMKNGSLYDHLFGFLDKRLSWPIRQKIALGTARGLAYLHYGAQPAIIHRDIKASNILLDENFEPKVADFGLAKFTPEGMTHLSTRVAGTMGYVAPEYALYGQLTERSDVYSFGVVLLELLSGRKALGVRSHDSQPFLVTDWAWSLVREHKAMDVIEEGMPELGSPEVVEKYVLIAVLCSHPQLYARPSMDQVVKMLETELSVPSIPERPIPLVADIDEIERSMSSSGSAPHSGSVGFHSFTLRNDHK 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29889142 29890989 - Lsi02G023270.1 Lsi02g02327 657069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02327 615 SUPERFAMILY Protein kinase-like (PK-like) 266 565 IPR011009 -
Lsi02g02327 615 Pfam Protein kinase domain 290 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02327 615 ProSiteProfiles Protein kinase domain profile. 289 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02327 615 SMART serkin_6 289 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02327 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Lsi02g02327 615 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKF3-RELATED 16 614 - -
Lsi02g02327 615 Pfam SPARK 21 159 IPR043891 -
Lsi02g02327 615 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524
Lsi02g02327 615 MobiDBLite consensus disorder prediction 591 607 - -
Lsi02g02327 615 PANTHER OS01G0750732 PROTEIN 16 614 - -
Lsi02g02327 615 CDD STKc_IRAK 295 565 - -
Lsi02g02327 615 Gene3D Transferase(Phosphotransferase) domain 1 370 579 - -
Lsi02g02327 615 MobiDBLite consensus disorder prediction 591 615 - -
Lsi02g02327 615 Gene3D Phosphorylase Kinase; domain 1 261 368 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02327 Lsi-Chr2:29889142 Lsi05g00175 Lsi-Chr5:2506651 4.16E-119 dispersed
Lsi02g02327 Lsi-Chr2:29889142 Lsi11g01627 Lsi-Chr11:24618672 3.80E-76 transposed
Lsi02g02327 Lsi-Chr2:29889142 Lsi06g00871 Lsi-Chr6:18218127 3.05E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83428 PF00069 Pkinase 2.80E-40 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02327 - - csv:101222675 1109.36