Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02350 ATGGAATTGCAAAGAGAGATTATTGTATTCCGATGCCGGAGAGGAAATCTTCGCTACATTACGCCATGGATTTCCTATTTCATCAGGATTCTTCCGCCAAGAACTCCGTCAACATTTGGATTCCTTCCACTGCAAGTGATCTTCTTTTCGGGATTTACGAGACTGAGCTCTTGGTTTCATGGATCCATTCGCTTTTCTGTCGCAATTGGGCCTGAAATCAGACCCAGAAGCGGCGCACTTCACAAACGTTGGCTGAATGAGTCAATTACTTCCCTAGCCATTGTTTCAGGTGAAGAAGAAACGGTTCTTTCGCAATTTTCTGGCAATCATATTGTACATTCTGCATCCTTGAACAATACAATTTCATACTTATATCCCATATCCAAATGGGGGAAAAGTCACCATGACTTATATGCAACTTCATCATATTACCATGACTACTTAGAATGTAACTTGAAAACTCATGACACAGGTTCCCTCAACTTATTCAAGATATTGGATGTTGGCTCAGTAGACACGCAGGATTATTTTGGTACATTTCAATCCTGTACATTTTTAGTTTGGCCGATGCTTGTTTTCGTGCCTATGATAGTATCTGGATATAGAATAACTTTTCACTTGTTTCAATATTATATTCGAGAAGCTAGCGACTTTAATCTCTTTTTTGATCGACCCTCTTTCTCTGTTCTTCCATTCATAATTTCACCACTTGGAGCAATCTTAACAGCGACAGATAGTGTTTGCACCTTGCAAGTTCTTAAACAAGATGAGACACCTTTACTTTATAGTCTGGTCTTTGGCGAAGGTGTGGTCAATGATGCTACCTCAGTGGTGCTCTTCAATGCAATCAAGAAATTTGACCTCTCTCACATCACTTCAACAAATGCCATTCGGTTAGCCGGAAGTTTCTTAGTTTTGTTCTTGGGAAGCACATTACTGGGAATTGCAGTTGGGCTGCTATGTGCATTTATCATAAAGAAGCTATCCTTAGGCAGGCACCCTACAGATTATGAAGTTGTTCCGATGATTTTAATGGCCTACCTTTCATATATGATTGCTGAATTGTTGCTTCTTAGTGGTATTCTTAGTGTGTTCTTTTGTGGGATTGTCATGTCTCACTACACATCTTGGAATAATGGGAGTGGCAGCTCCAATAATGAGATTGGCAGTTCCAGACTAATACCACGCCATGCTTTTGCAACATTATCTTTCGTTGCAGAGATTTTCATCTTCCTTTATGTTGGTATGGATGCTTTGGATATTGAGAAGTGGAATGTTGTTAGAGAAAGAAGGAAAGAAATAAATGTAGGCCCTGGTAAATCAGTTGGAGCAAGTCTTATACTGCTAGGTCTTGTTCTTGTTGGAAGAGCAGCTTTTTTTACAATTTGGTGGGCTGGACTCATGAGAGGTGCTGTATCAGTGGCACTTGCCTATCATCAGTTTGCAAGGTCAGAAGAAAAGCAAGGGGCTTCGATAATGATAACTAGCACCATTACCATTGTTCTCTTCACAAATGTGGTGTTTGGATTGTTGACAAAGTCAAGACGCATGATTCCTCGAATTAACAACTCAACATATTTATATATTCCTTTACTTCAAGAATTGAGTGATCATCCGTTGTTGGTTGATAAGAATGATATTGAATCCAGCACCACCGAACTTAACCAACTTCCTCCAGACAGTTTCATGTCGTTTATGACATCTCCATCTAAATGTCTCCATTACTATTGGTATAGGTTTGATGATTGCTTCATGCGTCCTGTTTTTGGAGGGAGTGAATCATCATTGGAGCATCTCACTCCCTCAGCTTCTCCC 1815 40.0 MELQREIIVFRCRRGNLRYITPWISYFIRILPPRTPSTFGFLPLQVIFFSGFTRLSSWFHGSIRFSVAIGPEIRPRSGALHKRWLNESITSLAIVSGEEETVLSQFSGNHIVHSASLNNTISYLYPISKWGKSHHDLYATSSYYHDYLECNLKTHDTGSLNLFKILDVGSVDTQDYFGTFQSCTFLVWPMLVFVPMIVSGYRITFHLFQYYIREASDFNLFFDRPSFSVLPFIISPLGAILTATDSVCTLQVLKQDETPLLYSLVFGEGVVNDATSVVLFNAIKKFDLSHITSTNAIRLAGSFLVLFLGSTLLGIAVGLLCAFIIKKLSLGRHPTDYEVVPMILMAYLSYMIAELLLLSGILSVFFCGIVMSHYTSWNNGSGSSNNEIGSSRLIPRHAFATLSFVAEIFIFLYVGMDALDIEKWNVVRERRKEINVGPGKSVGASLILLGLVLVGRAAFFTIWWAGLMRGAVSVALAYHQFARSEEKQGASIMITSTITIVLFTNVVFGLLTKSRRMIPRINNSTYLYIPLLQELSDHPLLVDKNDIESSTTELNQLPPDSFMSFMTSPSKCLHYYWYRFDDCFMRPVFGGSESSLEHLTPSASP 605
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 30131308 30139367 - Lsi02G023500.1 Lsi02g02350 657092
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02350 605 Pfam Sodium/hydrogen exchanger family 237 512 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lsi02g02350 605 PANTHER SODIUM/HYDROGEN EXCHANGER 237 459 IPR018422 GO:0006812|GO:0015299|GO:0016021
Lsi02g02350 605 PANTHER SODIUM/HYDROGEN EXCHANGER 461 592 IPR018422 GO:0006812|GO:0015299|GO:0016021
Lsi02g02350 605 PANTHER SODIUM/HYDROGEN EXCHANGER 237 459 - -
Lsi02g02350 605 PANTHER SODIUM/HYDROGEN EXCHANGER 461 592 - -
Lsi02g02350 605 Gene3D - 236 282 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02350 Lsi-Chr2:30131308 Lsi06g00185 Lsi-Chr6:1992647 5.87E-89 dispersed
Lsi02g02350 Lsi-Chr2:30131308 Lsi02g02351 Lsi-Chr2:30142221 6.18E-132 tandem
Lsi02g02350 Lsi-Chr2:30131308 Lsi09g01394 Lsi-Chr9:21975581 3.14E-96 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02350 - - pvy:116120185 395.971