Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02351 ATGGAATCGTATTTTGGAAGCACTGTGATGAAGTTGGCTTTGAAAGTGGACCCTGAAGAGCATCGTGTTGCATTGTTTGTATTACTTCTCTGTGCTTGTATTGTAATTGGGCATCTTCTTGAGAAAAGTCGTTGGATAAATGAATCAGTCACTGCTATTTTCATTGGTCTTTTCTCTGGAACTCTCATCTTATTAACAACCAAAGGCAGAAACTCACGTATCCTAGTGTTTAGTGAAGAACTTTTCTTCATTTATGTTCTTCCACCTATAATTTTTAATGCCGGGTTTCAGGTGAAAAAGAAACAGTTCTTTCGAAACTTTCTAATGATCATGTTGTTTGGGGCTGTTGGTACTGTGATCTCATTTTTCATCATATCACTAGGTTCGCTCCATTTATTCAAGAAATTTGACATTGGCTTCTTAGACGTGGCCCTTGGAGCAATCTTATCGGCGACAGATAGTGTTTGCACCTTGCAGGTGCTTAATCAGGACGAGACTCCTTTACTGTACAGTCTAGTCTTTGGTGAAGGTGTGGTTAATGATGCTACTTCTGTCGTACTTTTCAAAGCAATCCAGAGATTCGACCTCTCTCACATCACCTCATCCAACGGCATTCAGCTTCTTGGAAACTTTTTCTATTTATTTTTTACGAGCACCTTGCTGGGAGTGATTTTTTTGGTTCTTAGGAAGTTGAGACTCTACTTTAACTCACAGGTTGGGCTGGCCAGTGCATACATCATAAAGAAACTGCACTCAACTGATCGGGAGGTTGCTTTGATGATTTTAATGCCTTACCTTTCGTATATGACTGCTGAATTGTGCAATCTAAGTGGTATTCTTACCATGTTCTTTTGTGGGATTGTCATGTCTCATTACACTTGGCATAATGTGACTGAAAGTTCACGAGTGACCACCAAGCATACTTTTGCAACGTTCTCATTTGTTTCAGAGATTTTCATCTTCTTATATGTTGGTATGGATGCCTTGGATATTGAGAAGTGGAAAGTTGTTGGCCAAAGGCCTTGGACCTCAGCTGGAGTGAGTCTAATACTGCTTGGTTTAGTCCTTGTTGCGAGAGCAGCTTTTGTTACAATTTGGTGGGCTGGCCTCATGAGGGGTGCTGTATCTGTGGCCCTTGCTTATAATCAGTTTACAAGGTCAGGACACACGCAACTGCAAGGGAATGCGATCATGATTACTAGCACAATCACAATTGTCCTCATCACTAATGTGGTATTTGGACTATTAACAAAACCTATTGTAAGGTACATGCTTTCACTGCATGATAGACAAATGGATGGCATAATTGTAGCAGATTCTCCATTTAAGTCGCTGAATGACCCTCTTCTGCCTGGTGTCGAAGATACCGAATCCGATGTCGGAGGACCGAACATTCCCCGTCCTACCAGCTTACGAATGCTGTTGACAACTCCAACTCGTTCTGTCCATTACTATTGGCGGATGTTCGATGATCGATACATGCGTCCCGTTTTTGGTGGGAGAGGTTTTGTACCTTTCATCCCTGGTTCACCAACTGAAAAGTATATCCATTGA 1554 41.57 MESYFGSTVMKLALKVDPEEHRVALFVLLLCACIVIGHLLEKSRWINESVTAIFIGLFSGTLILLTTKGRNSRILVFSEELFFIYVLPPIIFNAGFQVKKKQFFRNFLMIMLFGAVGTVISFFIISLGSLHLFKKFDIGFLDVALGAILSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFKAIQRFDLSHITSSNGIQLLGNFFYLFFTSTLLGVIFLVLRKLRLYFNSQVGLASAYIIKKLHSTDREVALMILMPYLSYMTAELCNLSGILTMFFCGIVMSHYTWHNVTESSRVTTKHTFATFSFVSEIFIFLYVGMDALDIEKWKVVGQRPWTSAGVSLILLGLVLVARAAFVTIWWAGLMRGAVSVALAYNQFTRSGHTQLQGNAIMITSTITIVLITNVVFGLLTKPIVRYMLSLHDRQMDGIIVADSPFKSLNDPLLPGVEDTESDVGGPNIPRPTSLRMLLTTPTRSVHYYWRMFDDRYMRPVFGGRGFVPFIPGSPTEKYIH 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30142221 30153112 - Lsi02G023510.1 Lsi02g02351 657093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02351 517 PANTHER SODIUM/HYDROGEN EXCHANGER 10 363 IPR018422 GO:0006812|GO:0015299|GO:0016021
Lsi02g02351 517 PANTHER SODIUM/HYDROGEN EXCHANGER 10 363 - -
Lsi02g02351 517 Pfam Sodium/hydrogen exchanger family 26 422 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lsi02g02351 517 PRINTS Na+/H+ exchanger signature 110 118 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lsi02g02351 517 PRINTS Na+/H+ exchanger signature 81 92 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lsi02g02351 517 PRINTS Na+/H+ exchanger signature 95 109 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lsi02g02351 517 PRINTS Na+/H+ exchanger signature 146 156 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lsi02g02351 517 Gene3D - 142 190 - -
Lsi02g02351 517 PANTHER SODIUM/HYDROGEN EXCHANGER 363 516 IPR018422 GO:0006812|GO:0015299|GO:0016021
Lsi02g02351 517 PANTHER SODIUM/HYDROGEN EXCHANGER 363 516 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01171 Lsi-Chr2:14367454 Lsi02g02351 Lsi-Chr2:30142221 1.35E-45 dispersed
Lsi02g01866 Lsi-Chr2:24431593 Lsi02g02351 Lsi-Chr2:30142221 2.13E-29 dispersed
Lsi02g02351 Lsi-Chr2:30142221 Lsi09g01394 Lsi-Chr9:21975581 0 dispersed
Lsi02g02350 Lsi-Chr2:30131308 Lsi02g02351 Lsi-Chr2:30142221 6.18E-132 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02351 - K14724 csv:101206431 900.197