Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02372 ATGGGAATCTCAAACATTACAGGTGAAAATCATCATGCAAACTTGTCTTCAGCCAACAGTGTGGAAGATCAATTAGAAGAAGAAGTTGATCAACAAAACAATAATCAACTTCTTAATCACTTCCTCTATGGCTCTCCCAATAATGGAGATCATCAAACCAACTCCCATGGCTCATCTAATTCACTTCATCACCACCAACAAAGAGTTAAGAAGAAGCGAAATCTTCCCGGCACTCCAGATCCAAACGCTGAAGTTATTGCTCTATCACCAACAACCCTAATGGCTAGGAATAGGTTTGTGTGTGAGATTTGCAACAAGGGGTTTCAAAGAGATCAAAACCTTCAATTGCATAGGAGAGGCCACAACCTTCCATGGAAACTCCGGCAAAGAACTGGGTTGGAAGTGAAGAAAAGGGTTTATGTGTGCCCCGAATCAGCGTGCGTTCATCACAACCCGGCCCGAGCTCTCGGCGATCTTACCGGAATTAAGAAGCATTTTAGTAGAAAGCATGGGGAGAAGAAATGGAAGTGTGAGAAATGCTCCAAGAAATATGCAGTTCAGTCTGATTTGAAAGCTCACCAAAAGACTTGTGGCACTAGGGAATATAAATGTGATTGTGGAACTCTATTTTCCAGTTTCATCACCCACAGAGCTTTTTGCAATGCATTAACTGAAGAAAACAACAAACTAAAGCAAGGAATTCTCAACAACAACAATAATAATAACATAGAACCAATCTCAATTATCTCCACTCCAAAACTCCCTCATTTTGGCACATCATCAATCATGCCTGAATTCAACCTTTATCATCAAAACAACCCTTTTAAATCCCACCCCCAAGAACTCAACAACTCAACCCCGGCCACCGGTGCCCTTGGAGGCTTGTTCATGACTGGACCCCGAAGCAGCAACAACTCTTCTTCTTTCTCAAGCCTTAAGCTCAGCTCCACCACCTCGTCGCGCTTTAGTTGCCTTTATGATAGTAAAAATGGCTGCCTTCAGGATTCTGGATTGGCAACAGAAGTATTGGTAACGTCGGCCACCGCATTGTTGCAAAAAGCTGCTCAAATAGGAGCCACTACAAGCTCTGTAGGTGTTTTGAAGTCACCATTGTTGGAAATGCCACATTCTGATCAACCAAACATGGTAGGGATGAATATGGGAATGTACGGACACATGATGATGATGAAAGAACAGGACAATTGTAGTAGCAACAACTCGAGTTTTGTCGTCCACGAAAAGGGCCAATGGCAACCGATATCGAGATTTTCAGGTGGCGGTAGCAGCGGCCAAGAGAGTCAAATGATGACTCTAGATTTGTTGGGAGAAAGAGGGTGGAGGCTCAGGCAATTGCAGGGAGATGAAAGCCACCATCACCAGCAGGAGTTGGTGCCAATTATGAAGCATTTTGAGATGCAGAACTTTCATGGGGATTCAAATGTTGACAAATCTATATTTGAGTTTTGA 1467 43.15 MGISNITGENHHANLSSANSVEDQLEEEVDQQNNNQLLNHFLYGSPNNGDHQTNSHGSSNSLHHHQQRVKKKRNLPGTPDPNAEVIALSPTTLMARNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTGLEVKKRVYVCPESACVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDLKAHQKTCGTREYKCDCGTLFSSFITHRAFCNALTEENNKLKQGILNNNNNNNIEPISIISTPKLPHFGTSSIMPEFNLYHQNNPFKSHPQELNNSTPATGALGGLFMTGPRSSNNSSSFSSLKLSSTTSSRFSCLYDSKNGCLQDSGLATEVLVTSATALLQKAAQIGATTSSVGVLKSPLLEMPHSDQPNMVGMNMGMYGHMMMMKEQDNCSSNNSSFVVHEKGQWQPISRFSGGGSSGQESQMMTLDLLGERGWRLRQLQGDESHHHQQELVPIMKHFEMQNFHGDSNVDKSIFEF 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30392161 30396080 - Lsi02G023720.1 Lsi02g02372 657114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02372 488 MobiDBLite consensus disorder prediction 30 62 - -
Lsi02g02372 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 121 IPR013087 -
Lsi02g02372 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 175 203 IPR013087 -
Lsi02g02372 488 Gene3D Classic Zinc Finger 12 126 - -
Lsi02g02372 488 MobiDBLite consensus disorder prediction 276 291 - -
Lsi02g02372 488 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 47 417 - -
Lsi02g02372 488 SUPERFAMILY beta-beta-alpha zinc fingers 98 196 IPR036236 -
Lsi02g02372 488 Gene3D Classic Zinc Finger 153 231 - -
Lsi02g02372 488 MobiDBLite consensus disorder prediction 1 83 - -
Lsi02g02372 488 Coils Coil 15 35 - -
Lsi02g02372 488 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 47 417 - -
Lsi02g02372 488 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Lsi02g02372 488 MobiDBLite consensus disorder prediction 1 22 - -
Lsi02g02372 488 MobiDBLite consensus disorder prediction 276 297 - -
Lsi02g02372 488 SMART c2h2final6 140 170 IPR013087 -
Lsi02g02372 488 SMART c2h2final6 175 195 IPR013087 -
Lsi02g02372 488 SMART c2h2final6 99 121 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02372 Lsi-Chr2:30392161 Lsi06g00122 Lsi-Chr6:1182292 2.84E-110 dispersed
Lsi02g02372 Lsi-Chr2:30392161 Lsi01g01357 Lsi-Chr1:11741008 1.36E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24899 None None None None Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02372 - - bhj:120069139 790.801